Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28720 644 / 0 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 622 / 0 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT1G04180 621 / 0 YUC9 YUCCA 9 (.1) AT1G04610 585 / 0 YUC3 YUCCA 3 (.1) AT2G33230 559 / 0 YUC7 YUCCA 7 (.1) AT5G25620 470 / 6e-165 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT5G11320 466 / 2e-163 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G13260 456 / 1e-159 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT4G32540 446 / 1e-155 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT1G21430 358 / 2e-121 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022851 [exp] 704 / 0 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10023695 [exp] 586 / 0 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10035244 [exp] 578 / 0 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10043142 [exp] 504 / 1e-178 AT1G04610 599 / 0.0 YUCCA 3 (.1) Lus10007671 [exp] 484 / 4e-170 AT4G13260 518 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10008092 [exp] 463 / 2e-162 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10013125 [exp] 459 / 5e-161 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10011093 [exp] 456 / 1e-159 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10023637 [exp] 454 / 4e-159 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254200 [exp] 682 / 0 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.008G174600 [exp] 602 / 0 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 578 / 0 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.006G243400 [exp] 497 / 2e-175 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 496 / 3e-175 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 482 / 8e-170 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 467 / 4e-164 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 456 / 1e-159 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.005G111800 [exp] 367 / 7e-125 AT1G21430 425 / 4e-148 Flavin-binding monooxygenase family protein (.1) Potri.016G003300 [exp] 358 / 2e-121 AT1G21430 436 / 7e-153 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10011274 pacid=23149935 polypeptide=Lus10011274 locus=Lus10011274.g ID=Lus10011274.BGIv1.0 annot-version=v1.0 ATGGATAGCTTGTTTCGCTTAGCCGATGACGAGGATTTCTCATCGCCCCGATGCATTTGGGTTAACGGCCCAGTCATTGTCGGTGCTGGACCCTCTGGTC TAGCAACTGCTGCTTGTCTCCGTGAACAAGGCGTCGCCTTTCTAGTCATCGAGAGAGAGGATTGCTTAGCCTCTCTATGGCAGAAACGTACGTACGACAG GCTTAAACTCCACCTTCCCAAACAATTCTGCCAGCTTCCTAAACTACCCTTCCCTGACCATTTCCCTGAATACCCAGACAAGAAGCAGTTCGTTCACTAC CTTGAATCCTACGCCCTCCGCTTCGACATCAACCCCAATTTCAACCAGTGCGTCCAATCTGCCAGCTTCGACCACACCACCGGCCTTTGGAGGGTCAAGA CTACTAGTACTGATCGGACCGTGGAACAACTTGAGTACATCTGCCGCTGGCTTGTGGTGGCCACGGGCGAGAATGCTGAGTGCGTAATGCCGGACATTGA TGGCTTGGCTGAGTTCGGCGGCGAGGTGATTCATGCTTCCGATTACAAGTCCGGGGAGAAGTACAGGGGAAAGAAAGTTCTCGTAGTGGGTTGCGGAAAT TCAGGGATGGAGCTCTCTCTTGATCTCTCCAACCACAATGCTTCCCCTTCCATGGTCGTTCGCAGCTCGGTTCACGTAATGCCAAGAGAAATATTTGGGA AATCAACCTTCGAGTTGGCGGTTATGCTGATGAGCTGGCTACCACTTTGGATGGTCGACAAAATTATGCTAATCTTAACATGGCTGGTGATCGGAAGCCT CGTTAGATACGGTCTCAAACGGCCGTCGGTTGGTCCATTAACCCTGAAGAACACGGAAGGGAAAACCCCTGTTCTGGATGTGGGAGCACTGGAGAAGATC AGATCCGGGGACATCAAAGTGGTGCCCGGAATCAAGAAATTATCACGTGGGCAAGTGGAGCTCGTCAATGGACAAGTTTTGGAAGTGGATTGCGTGGTGA TGGCAACTGGGTACAGAAGCAATGTGCCTTACTGGCTTGAGGAAACGGACTTGTTTGGGAAGAATGGTTTCCCAAGCAGCTGGAAAGGGAAATCAGGGCT ATATGCAGCTGGGTTCACTAGGAGAGGGCTAGCTGGTGCTTCTTCAGATGCTGTTAACATCTCTCAAGATATTGCTAGAGTGTGGAAGAGTGAAACTGAG CGCCAGAATAAGCGGACCACTGCTTGCCTTAGGCGCTGCATCTCACTGCACTTCTGA
AA sequence Show only first row Show all	>Lus10011274 pacid=23149935 polypeptide=Lus10011274 locus=Lus10011274.g ID=Lus10011274.BGIv1.0 annot-version=v1.0 MDSLFRLADDEDFSSPRCIWVNGPVIVGAGPSGLATAACLREQGVAFLVIEREDCLASLWQKRTYDRLKLHLPKQFCQLPKLPFPDHFPEYPDKKQFVHY LESYALRFDINPNFNQCVQSASFDHTTGLWRVKTTSTDRTVEQLEYICRWLVVATGENAECVMPDIDGLAEFGGEVIHASDYKSGEKYRGKKVLVVGCGN SGMELSLDLSNHNASPSMVVRSSVHVMPREIFGKSTFELAVMLMSWLPLWMVDKIMLILTWLVIGSLVRYGLKRPSVGPLTLKNTEGKTPVLDVGALEKI RSGDIKVVPGIKKLSRGQVELVNGQVLEVDCVVMATGYRSNVPYWLEETDLFGKNGFPSSWKGKSGLYAAGFTRRGLAGASSDAVNISQDIARVWKSETE RQNKRTTACLRRCISLHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10011274 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021046 [exp]	13.4	0.6926
AT1G05070			Protein of unknown function (D...		Lus10035288 [exp]	23.3	0.6999
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10003651 [exp]	24.4	0.6988
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	26.9	0.7085
					Lus10012740 [exp]	28.8	0.7027
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	79.1	0.6561
AT1G77610			EamA-like transporter family p...		Lus10042700 [exp]	79.3	0.6670
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10007525 [exp]	87.3	0.6595
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021718 [exp]	102.7	0.6281
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	127.4	0.6343

Compare expression of checked genes

Lus10011274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.