Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006165 [exp] 223 / 2e-72 AT5G45260 66 / 5e-12 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) Lus10005957 [exp] 188 / 4e-58 AT1G48120 75 / 1e-14 hydrolases;protein serine/threonine phosphatases (.1) Lus10033313 [exp] 160 / 3e-47 AT1G17930 72 / 1e-13 Aminotransferase-like, plant mobile domain family protein (.1) Lus10021566 [exp] 150 / 8e-44 AT1G17930 54 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10008733 [exp] 144 / 3e-43 ND / Lus10008761 [exp] 150 / 1e-42 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10022091 [exp] 154 / 2e-42 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10039393 [exp] 145 / 9e-42 AT1G17930 73 / 3e-14 Aminotransferase-like, plant mobile domain family protein (.1) Lus10033114 [exp] 139 / 2e-40 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10011276 pacid=23149938 polypeptide=Lus10011276 locus=Lus10011276.g ID=Lus10011276.BGIv1.0 annot-version=v1.0 ATGCCAGATGACGGCGAGGAGGAGTTATTTGGTGGCTACGAGTCCGATACCTATCAGCCTCCACCATTTAGGGCTTTTACTAGTTCGTCTCATGCTTTAG CGAGCGTTGGTGTTGCAGCTGGAAGAGATGCTCGTTTTGCTCCTACCACGAGTATACATGGTGGGGAGATGGATGAGGAGGTCCAGACTACTGGGGTCGG GGGAAACCTTTCCCGCACTTGGCAGTTTGAGTCGGGGATAGAGGATGGAGGTCCGATTGCGACCAGTGTGATTCCTAGTTTCGGGGTCACATTGCGCATT ATCTGTGGGAGTTCGGTGTGGACGACCGTAACATCCGAGAAGTCGATGTTAGCCCTGGGGAGCGGTTTAGTGGATGAGGATGCATACAGGGTATTCATGT TTTGTCTGTTGGGGTCGACTCTGTTCACTGATAAGACCGTCGATTGTACTCGTCTGGTGCTGTGGGAGTACTTTATGGGGGGGGGGGGGGGTGTCCACTG TTTCGAGATATGCTTGGGAGACTGGGGCTCTAGCAGGTTGTACCACGAGCTGGGTAAGGCGAGCAGGGCTAAGTGTAAGGGGATGACGGGGAGCGTGTCT ATACTTCAGTCTTGGATTCACGAGTACTTCCTTAGTACTCGTGTTGCTAGACTAGTGGCTCGGGAGCGGGGTGATACCGAGGCCTTGGTTGGGCGGTGGA GCAGTAGCGAGCAGCCAGATAGATCATACGACTTCATGCACCGTCGTTTGGAGTACTACCGTCGTCTGCTAGATGATATGACCGCACGGGATGTGATTTA G
AA sequence Show only first row Show all	>Lus10011276 pacid=23149938 polypeptide=Lus10011276 locus=Lus10011276.g ID=Lus10011276.BGIv1.0 annot-version=v1.0 MPDDGEEELFGGYESDTYQPPPFRAFTSSSHALASVGVAAGRDARFAPTTSIHGGEMDEEVQTTGVGGNLSRTWQFESGIEDGGPIATSVIPSFGVTLRI ICGSSVWTTVTSEKSMLALGSGLVDEDAYRVFMFCLLGSTLFTDKTVDCTRLVLWEYFMGGGGGVHCFEICLGDWGSSRLYHELGKASRAKCKGMTGSVS ILQSWIHEYFLSTRVARLVARERGDTEALVGRWSSSEQPDRSYDFMHRRLEYYRRLLDDMTARDVI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011276 [exp]	0	1
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	3.6	0.9462
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	5.1	0.9462
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10016190 [exp]	5.3	0.9254
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	6.2	0.9355
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	7.2	0.9311
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10018493 [exp]	7.7	0.8953
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	8.1	0.9268
					Lus10011637 [exp]	8.8	0.9262
AT2G23945			Eukaryotic aspartyl protease f...		Lus10019960 [exp]	9.7	0.8519
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	10.8	0.9190

Compare expression of checked genes

Lus10011276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.