Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20250 43 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011277 pacid=23149925 polypeptide=Lus10011277 locus=Lus10011277.g ID=Lus10011277.BGIv1.0 annot-version=v1.0 ATGAATATGAAGAAGAGGAAAACTGATGGGAATAGAGCGAATATTCTATATCCTATCCGAGCTCTCAGACTTCCGGCTCTGAACCCCAATAGCATCAACG CTACAGTAAAGGAAGCTGATGAACCCTCAACATCTGAATTTGCTTCCTTCAAGAAATTGAAAGATGATGCAGGCCAGAGGTTACGGCATCGAACTCTTAA TAGTGAGCCAAAGAACTCCAGAACAAGTTCCATCACACAAAGCCGAGCCGGGGATTTTGTTCTTCAAGAGAAATCAGGGATTTCCAGTAATAGCCATGAT TACATGTTGCACCACAAAGCTGCTCCACCTGATAATTCTGGGGCCTTACGCACACCAGCTCCCAATGGACTATCCGAAGAATCAGTTGCGAATAACCAGC GTTTTACCTTACTGGCAGGGTTTGCCAAAACGGATAATAGTATGACTATGAGGGAAATACCCAGCCGACGGAAAATCAGCGCCACCTTGGAACCTTACGT TCTTGCTTCAGAGTCCCCTGGGGTTGCTAGGCCTGGAGAGCTCTTTTATAGGAAGAGACAAAGACTGCGACAGTGGGTTACTGAGGTTTCGTATCCTGAA ATCAATGATCTCTCTTGTAACAGGTATGACAGAGTTTCCATGATGCTGAACCGGCTTTTCCCTGTCAGAGATCCTAAACTTACCAGTGACGAAGACAAGT CGCTTGGTTCTCTGGAGCACGAAACTTGCTCCAGGAAACACCTAAACCTGGCTGAAAAGAACCTTGCACAGTTTGAGTATGGGCGATCTTCAGACGTTAG TTTGGCATCTTGTTGGCGTGGAATACCAAGTCATAGAGATCCTTCCAACATTCATTTTTCAACAGGTCGTTCTCATGTACCCTGTTTGAACTATGAGAAT AGGGAGCTTGACTATGGAAATTGGGGAAGAGTGCCTCAAAGTTCTGATGGAAGAAATGTGTATGATTCTCGTCAGCTTAAAGAATGGGATGAAGCATGTT TTCCCACTGAATGTTCAAGTGCAAGATCACCGCATTCCCTCTTGCTAGGTTGGGACTTTGAAAAGGAGGGTGAAGAATCGAATTCATATTCGGGTATGTG GCGAAGCAGAGGGACGGAGGAATGCTCCAGCACGCTGAGTCTATGGTGTGATGATCGAAGGAAGGATCCTGGCGATAGATTTTGTGTCAGGGGATTACGT ACACCATCAATGGTGTCATATTATCATCAGAACCTTCCTGCTGGGAGGATATCAGAGTTGCCTCATTCTGGTAGCTTTTCTCGAAAATATGATAAAACTG CAATTCTGGAAGACACGCGTTTGCCCTTAGAGAATGAAGACAACAGCGAATGGCATTGTCCTCAAGATCAGCGTTGGTGCTTGGGCAATATTACAAATGA AGATCGTTATGCCGGGAATATTGAAACTTGCTCTACTACCTCTTGGTTTCATTTTGATTCGCCACAAAAATGCTTACCGTGGAATGGCTTCTCAAAACCT CTTGCTCCAGATGTTTGGGTGGAATCTCGGGATGTAATTTTTCACCAAGACATTTTTAATCATTTACGTGCAGACAAGGAAAATGTTGATGGCCGATGGT CTTGTTATTCTCACGAGAAGGAGACGCCATTGCCTTTGCTGCTAGATAAATCGCACTGGCATGTAGGTGGGGAAGATGGGTACTGCTGA
AA sequence Show only first row Show all	>Lus10011277 pacid=23149925 polypeptide=Lus10011277 locus=Lus10011277.g ID=Lus10011277.BGIv1.0 annot-version=v1.0 MNMKKRKTDGNRANILYPIRALRLPALNPNSINATVKEADEPSTSEFASFKKLKDDAGQRLRHRTLNSEPKNSRTSSITQSRAGDFVLQEKSGISSNSHD YMLHHKAAPPDNSGALRTPAPNGLSEESVANNQRFTLLAGFAKTDNSMTMREIPSRRKISATLEPYVLASESPGVARPGELFYRKRQRLRQWVTEVSYPE INDLSCNRYDRVSMMLNRLFPVRDPKLTSDEDKSLGSLEHETCSRKHLNLAEKNLAQFEYGRSSDVSLASCWRGIPSHRDPSNIHFSTGRSHVPCLNYEN RELDYGNWGRVPQSSDGRNVYDSRQLKEWDEACFPTECSSARSPHSLLLGWDFEKEGEESNSYSGMWRSRGTEECSSTLSLWCDDRRKDPGDRFCVRGLR TPSMVSYYHQNLPAGRISELPHSGSFSRKYDKTAILEDTRLPLENEDNSEWHCPQDQRWCLGNITNEDRYAGNIETCSTTSWFHFDSPQKCLPWNGFSKP LAPDVWVESRDVIFHQDIFNHLRADKENVDGRWSCYSHEKETPLPLLLDKSHWHVGGEDGYC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011277 [exp]	0	1
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10032746 [exp]	7.7	0.8651
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	9.6	0.8582
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	14.7	0.8456
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	16.9	0.8648
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	17.2	0.8524
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	23.7	0.8492
AT1G56140			Leucine-rich repeat transmembr...		Lus10020688 [exp]	26.8	0.8263
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10029174 [exp]	27.1	0.8286
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	27.3	0.8447
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10033636 [exp]	32.0	0.8389

Compare expression of checked genes

Lus10011277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.