Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43600 1297 / 0 AtAO3, atAO-2, AOgamma, AO3, AAO2 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) AT5G20960 1295 / 0 AT-AO1, AOalpha, ATAO1, ATAO, AAO1 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) AT2G27150 1239 / 0 AtAAO3, At-AO3, AOdelta, AAO3 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) AT1G04580 1227 / 0 ATAO-4, ATAO2, AAO4 ALDEHYDE OXIDASE 2, arabdopsis thaliana aldehyde oxidase 4, aldehyde oxidase 4 (.1) AT4G34890 405 / 1e-118 ATXDH1 xanthine dehydrogenase 1 (.1) AT4G34900 394 / 5e-115 ATXDH2 A. THALIANA XANTHINE DEHYDROGENASE 2, xanthine dehydrogenase 2 (.1) AT4G28780 332 / 1e-102 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 328 / 1e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G18430 322 / 4e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 313 / 1e-95 ATLTL1, LTL1 Li-tolerant lipase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040474 [exp] 2133 / 0 AT3G43600 1555 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10019386 [exp] 1592 / 0 AT3G43600 1635 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10013393 [exp] 1332 / 0 AT3G43600 1657 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10008429 [exp] 1328 / 0 AT3G43600 1652 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10034306 [exp] 407 / 4e-119 AT4G34890 2127 / 0.0 xanthine dehydrogenase 1 (.1) Lus10003106 [exp] 312 / 3e-95 AT3G04290 551 / 0.0 Li-tolerant lipase 1 (.1) Lus10004774 [exp] 235 / 3e-70 AT5G18430 311 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003579 [exp] 221 / 9e-62 AT3G04290 248 / 2e-77 Li-tolerant lipase 1 (.1) Lus10015950 [exp] 206 / 3e-59 AT3G04290 135 / 1e-41 Li-tolerant lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G153600 [exp] 1403 / 0 AT3G43600 1741 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Potri.004G191300 [exp] 1366 / 0 AT2G27150 1678 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) Potri.009G054600 [exp] 422 / 7e-125 AT4G34890 2077 / 0.0 xanthine dehydrogenase 1 (.1) Potri.002G253400 [exp] 379 / 2e-119 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 337 / 8e-104 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 331 / 2e-102 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024700 [exp] 326 / 2e-100 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 324 / 7e-100 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024400 [exp] 319 / 8e-98 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.013G051000 [exp] 318 / 1e-97 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02738 [flax] [poplar] Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase CL0264 [flax] [poplar] PF01315 [flax] [poplar] Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CL0233 [flax] [poplar] SufE_NifU PF03450 [flax] [poplar] CO_deh_flav_C CO dehydrogenase flavoprotein C-terminal domain CL0077 [flax] [poplar] FAD_PCMH PF00941 [flax] [poplar] FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10011279 pacid=23149948 polypeptide=Lus10011279 locus=Lus10011279.g ID=Lus10011279.BGIv1.0 annot-version=v1.0 ATGAGTACCACAGCTGCCACCGCCGTTGTGCTCCTAGCAGCGACCATTGTGGTCTTGCAGGTAGCAGGGCAGGATCCAGCTCCAGCTCCAGCTCCATCTC CAGGCTCAGCCCCTCCGGCTAGAGCCTTCATGGTGTTCGGGGACTCCCTAGTGGATGCCGGCAATAATAACTACTTAATGACAACAGCCCGTGCTGATAC GCCGCCAAACGGAATCGACTACCCGGGCCAAGTACCCACCGGTCGCTTCTCAAACGGCCTCAACTTTGCCGACCTTATCGCCGAGGCGCTTGGGATTCGG TCGCCGCTTCCCTTCCTAGACCCGGCTCTTCAGGGAGACAAGCTGCTAGCTGGTGCTAACTTTGCCTCCGCCGGCATCGGAGTCCTCAACGACACCGGTT TTCAGTTCGTTACGGTATTGAAAATGTACCAGCAACTAGAAATGTTCTTAGAGTACAAGCACAAGGTGGCAGGGGTAGTGGGTCCGGCGAAGGCGCAGGA GCTGGTGAGAAAGGCGGTGTTCCTAGTAACCTGTGGAGGGAACGATTTCGTAAACAACTACTTCTTGACTCCGATAGCTCCGAGGCGCAGTCAGTTCACA CTCTCTGATTACTGTGGCTTTGTCATATCCCACTACAAGAAGATCCTTTTGGCGCTCTATGGGCTGGGAGCGAGGAGGATATTGGTGACTGGGACTGGAC CTCTAGGGTGCATCCCAGCTGAGCTAGCATCCTTCCAAAGCAGCAACGGAGATTGCGCCACCGAGCCCCAACAAGCCGCCATGACTTTTAACCCCAAACT CTTTGACATGGTGGACAATCTCAACAGGGACCTCGGCACCGATATCTTCATCTCCGCTAATGCTTTTTCCCTCAAGATGGACATGATTGAGAAACCCCAG CTATACGTTGATGTTGATATAGAAGATTTGGGTGCTAACTCATTCTGCAGATCACCGTCTGACAGTACTGGTACTGGAGGAATTTGTAGTAGTGCTACAT TTCCTGAATTCCTGAAAATGCAGGGGAAATTGGACTCAGCTTCCGCCTCGTGGGTTGTTCCTCGGTCTACCGAGGAGCTTCGGAGATTAATGAATGGAAA TGTTAAGGTGAAGCTACTGGTTGGAAATACCGGAATTGGTTACTACAAGGAGGAATTAGATGATACCTATGACAGATACATTGACATCAGGTATGTTCCT GAGCTTTCGAGAATCAGTTATAAGGATCCGAACTGTGGTGGGATCAAATTCGGAGCAGCTGTAACGATTTCCAAAGCTATAACAGCCTTGAAGGCCTCAT CAGGATCATGTGGAGTAGTGTACCGAAAGATAGCGGACCACATGGAGAAAATCGCGACCCGGTTTGTTCGAAACACCGGTAGCATAGGTGGGAATCTGGT AATGGCTCAAAGGAAAGGGTTTCCATCAGACATTGCTACTATTCTTATTGCAGCAGGTTCTTACGTAGAGATACTGACCGGTACCGCTTCAATTGAAAGG CTGACACTGGAAGAGTTTCTTCAGGAAATTAGGCCACCGTTGGATGATTCCGCATCCGTACTAATCAGTATCGAAATACCTACCTCGAAATCTGCCGTGT TTGAAACGTATCGTGCTTCCCCAAGGCCTTTAGGGAATGCATTGGCTCATCTCAGCTCTGCCTTCTTGGCAGAGATCGACGGTGGAGATGTGATCAGCTC GTGCCGATTGGCATTCGGTGGGAATGGAATCAATCGTACGATTCGAGCTAGAAAGGCTGAGGATTTCTTGGCAGGCAAGAAAGTAACCGCCGGTGTTGTA TATGAAGCCATTAGACTTGTTAAACACAGTGTTACAAAATCGAGTGGTTCGGATCCTGATTACAAGTCGAGCTTAGCTGTCGGTTTCATTTTCGAGTTCC TTAACCCCTTGATCCAAATTAATGGGTTGGTAAGTGATGCTTGTGAGACAAGCTATCGCCTGTTATCTTCCGGGAAGCAGATTTTCCAAGTGCACAGAGA GAACCGACCGGTAGGGGAACCGGTTCGAAAATCTGAATCTCTAATTCAAGCGTCTGGTGAGGCAGTATTTGTAGATGACATTCCTTCACCTGAAAATTGT TTATACGGAGCATTTGTGTGGAGCACCAAGCCATTTGCTAGAGTGAAAGATATAGGTTTCGATTCGAATCGGATTCCAGATGGAGTTGTTGCTCTGATAT CTTCGAAAGACATCCCGAAAGGAGGCGCGAATTTGGGGTCGAAGACGATATTTGCTACCGAAACTCTGTTTGCAGATGATGTCACGCATTGTGCTGGGGA ACGCCTTGCTTTCGTGGTTGCAGATTCACAGAAACATGCAGATGCAGCAGCAAACATGGTTGTTGTAGATTATGATACAGTTGGGATGGAACCACCGATT CTGACTGTGGAAGATGCTGTTAAGAGATCCAGCTTTATCAGTGTTCCTCCGTTTCTTAAACCGGACGAAGTCTGTGATGTAACGAGAGGATTTGCTGAAG CAGATTACAGAATCATCAATGCTCAGATGAAAGTGAATTCACAGTACTACTTCTATATGGAAACACAGACTGCTATGGCGGTACCAGATGAAGATAACTG CATGGTGGTTTATAGCTCAAGCCAATGCCCAGAGGCTGCTGGTGTCACTATTGCAGAATGCATTGGTCTTCCTCAGCACAATGTACGTGTTATCACAAGG AGGGTTGGCGGTGGTTTTGGTGGGAAAGCCCTCAAATCTATACCTATAGCTACAACATGCGCACTTGCAGCTCAACTGCTACACCGACCAGTAAGGACAT ACCTCAACCGCAAAACCGACATCATAATCTCCGGAGGCAGACATCCAATGAAGGTCACCTACACTGCAGGATTCAAATCCAACGGAAAAATCACAGCTCT GAAACTCAAAATCCTAATCGACGCCGGTATGTCACCTGATGCAAGCGCCATCATTCCGGTCCACTTGGTAGCAGCACTCAAGAAGTACGACTGGGGCTCC CTATCGTTTGATATAAAGCTGTGCAAGACCAACCGGTCCAGCAAATCTACAATGCGAGCTCCCGGTGCGGTCCAAGGCACGTTCATTGCGGATACAGTGA TGGAAAATGTAGCATCGACTCTTGGCATGGACGTGGATGATCTAAGAGCTGTGAACCTTCATACTTACGACAGCATCAAGCTGTTCCATCCGAAATGCTT CGGGGAACGTGATGAGTATACCCTGAGGTGTATTTGGGAGAAACTAGCGAAATCATCGGAGTTTTACCGGAGGAGGGAAATGGTGGAGGGGTTTAACAGG GATAACTTGTGGAGGAAGAAAGGGATTTCGAGAGTGCCGATCGTTTTCGAAGTTGGGGCTACAAGCACTCCAGGGCGGGTTAGCATTCTCAGCGACGGAT CCATTGTTGTGGAAGTAGGAGGGATAGAACTGGGACAGGGTCTCTGGACAAAGGCCAAACAAATGGCTGCATTTGCCTTGAGTTCATTAATCAACTCTGA TTCTCGCGACAGTCTGCTAGAGAAGGTAAGGGTTGCTCAAGCTGATACCTTATCTCTGATCCAAGGAGGACTCACCGGTGGGAGCACGAAATCCGAATCG AGCTGCGAAGCGATCAGACTCTGCTGTAATGTTCTGGTTGAGAGATTACTTCCTCTGAAGGAGAAGCTGCAGAAGGAAGTTTCCGGCGGGTCGATGATCG GATGGGAGATGCTCATTTCCCAGGCGTATAAATTTTCAGTGAACTTAAGTGCAAGCTCTCTTTATGCTCCTGACTTCAGTACCAATCATTACTTGAACTA TGGAGCAGCAGCAAGCGAGGCAACCTGCCCTGCAAAATTTCATATGTCTGATGTAATACAGGTGGAGATAAATCTTCTCACAGGCGAAACAACAATTCTG AGATCAGATCTAATATATGACTGCGGACAAAGCTTGAATCCCGCCGTCGACATGGGACAGATTGAAGGAGCTTTCGTTCAGGGGATCGGATTCTTCATGA TGGAAGAGTACAACACGAATTCGGACGGTTTAGTGACGACAGACAGTACCTGGACATACAAGATTCCGACCATAGACACCATTCCCAAACAGTTCAATGT GGAAATCCTCAGCAGCGGACATCACCGGAATCGAGTTCTGTCTTCCAAAGCGTCGGGCGAGCCGCCCCTACTGCTGGCAGCATCAGTTCACTGCGCCACG AGAGCAGCCATTAGAGAAGCCAGGAAACAGCTGCATTCGTGGGGAGGCCTCGACGACAGTGATTACGCAAACTTTCATCTGGATGCACCGGCCACCATGG CAGTTGTGAAGAAGCTCTGTGGGTTGAACAGTGTGGAGAGCCACTTGAAATGGAAATTACTCAACCATAAGTAA
AA sequence Show only first row Show all	>Lus10011279 pacid=23149948 polypeptide=Lus10011279 locus=Lus10011279.g ID=Lus10011279.BGIv1.0 annot-version=v1.0 MSTTAATAVVLLAATIVVLQVAGQDPAPAPAPSPGSAPPARAFMVFGDSLVDAGNNNYLMTTARADTPPNGIDYPGQVPTGRFSNGLNFADLIAEALGIR SPLPFLDPALQGDKLLAGANFASAGIGVLNDTGFQFVTVLKMYQQLEMFLEYKHKVAGVVGPAKAQELVRKAVFLVTCGGNDFVNNYFLTPIAPRRSQFT LSDYCGFVISHYKKILLALYGLGARRILVTGTGPLGCIPAELASFQSSNGDCATEPQQAAMTFNPKLFDMVDNLNRDLGTDIFISANAFSLKMDMIEKPQ LYVDVDIEDLGANSFCRSPSDSTGTGGICSSATFPEFLKMQGKLDSASASWVVPRSTEELRRLMNGNVKVKLLVGNTGIGYYKEELDDTYDRYIDIRYVP ELSRISYKDPNCGGIKFGAAVTISKAITALKASSGSCGVVYRKIADHMEKIATRFVRNTGSIGGNLVMAQRKGFPSDIATILIAAGSYVEILTGTASIER LTLEEFLQEIRPPLDDSASVLISIEIPTSKSAVFETYRASPRPLGNALAHLSSAFLAEIDGGDVISSCRLAFGGNGINRTIRARKAEDFLAGKKVTAGVV YEAIRLVKHSVTKSSGSDPDYKSSLAVGFIFEFLNPLIQINGLVSDACETSYRLLSSGKQIFQVHRENRPVGEPVRKSESLIQASGEAVFVDDIPSPENC LYGAFVWSTKPFARVKDIGFDSNRIPDGVVALISSKDIPKGGANLGSKTIFATETLFADDVTHCAGERLAFVVADSQKHADAAANMVVVDYDTVGMEPPI LTVEDAVKRSSFISVPPFLKPDEVCDVTRGFAEADYRIINAQMKVNSQYYFYMETQTAMAVPDEDNCMVVYSSSQCPEAAGVTIAECIGLPQHNVRVITR RVGGGFGGKALKSIPIATTCALAAQLLHRPVRTYLNRKTDIIISGGRHPMKVTYTAGFKSNGKITALKLKILIDAGMSPDASAIIPVHLVAALKKYDWGS LSFDIKLCKTNRSSKSTMRAPGAVQGTFIADTVMENVASTLGMDVDDLRAVNLHTYDSIKLFHPKCFGERDEYTLRCIWEKLAKSSEFYRRREMVEGFNR DNLWRKKGISRVPIVFEVGATSTPGRVSILSDGSIVVEVGGIELGQGLWTKAKQMAAFALSSLINSDSRDSLLEKVRVAQADTLSLIQGGLTGGSTKSES SCEAIRLCCNVLVERLLPLKEKLQKEVSGGSMIGWEMLISQAYKFSVNLSASSLYAPDFSTNHYLNYGAAASEATCPAKFHMSDVIQVEINLLTGETTIL RSDLIYDCGQSLNPAVDMGQIEGAFVQGIGFFMMEEYNTNSDGLVTTDSTWTYKIPTIDTIPKQFNVEILSSGHHRNRVLSSKASGEPPLLLAASVHCAT RAAIREARKQLHSWGGLDDSDYANFHLDAPATMAVVKKLCGLNSVESHLKWKLLNHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20960		AT-AO1, AOalpha...	ARABIDOPSIS THALIANA ALDEHYDE ...		Lus10011279 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002545 [exp]	2.2	0.9237
AT1G15260			unknown protein		Lus10035880 [exp]	9.6	0.9184
AT1G23070			Protein of unknown function (D...		Lus10036614 [exp]	11.0	0.9138
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10040859 [exp]	15.3	0.8872
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	16.7	0.9115
AT5G67090			Subtilisin-like serine endopep...		Lus10009365 [exp]	17.1	0.9083
					Lus10014719 [exp]	18.3	0.9097
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10012228 [exp]	18.5	0.8935
					Lus10016109 [exp]	18.7	0.8724
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	19.0	0.9092

Compare expression of checked genes

Lus10011279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.