Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11750 286 / 7e-97 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) AT1G66670 149 / 5e-43 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT5G45390 147 / 1e-42 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G02560 146 / 4e-42 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT5G23140 134 / 4e-38 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT1G12410 127 / 9e-35 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) ATCG00670 114 / 8e-31 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1) AT4G17040 108 / 1e-27 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT1G09130 108 / 3e-27 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT1G49970 75 / 3e-15 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040477 [exp] 460 / 2e-165 AT1G11750 305 / 2e-104 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Lus10012156 [exp] 145 / 1e-41 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10007589 [exp] 144 / 2e-41 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10002422 [exp] 144 / 3e-41 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10001450 [exp] 144 / 2e-40 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10025022 [exp] 134 / 2e-37 AT1G02560 313 / 3e-107 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10010003 [exp] 134 / 2e-37 AT1G02560 308 / 2e-105 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10017397 [exp] 129 / 6e-36 AT5G23140 394 / 1e-140 nuclear-encoded CLP protease P7 (.1) Lus10010196 [exp] 129 / 7e-36 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152900 [exp] 278 / 5e-94 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.009G114001 [exp] 277 / 2e-93 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.003G103300 [exp] 151 / 5e-44 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.002G195200 [exp] 150 / 1e-43 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.014G119700 [exp] 150 / 2e-43 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.004G092100 [exp] 139 / 5e-39 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.007G071700 [exp] 135 / 1e-37 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.005G092600 [exp] 130 / 3e-36 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.001G115900 [exp] 121 / 9e-33 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) Potri.001G130601 [exp] 117 / 1e-31 AT5G45390 239 / 2e-79 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00574 [flax] [poplar] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Lus10011282 pacid=23149927 polypeptide=Lus10011282 locus=Lus10011282.g ID=Lus10011282.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCCTCAGCCAGACTCTCAGCTCCTCCTCCCCTAACAATCTCGGTCTCTTCTCGTCCTTCTCACCCTCCTCCTCCTCCTTCTTCTTCTTCCC TGTCTCTCTTCTTTCCGACCAGAAGCTCACCTTGTTCTAAGCTCGTAGTCTCCGCCTCGTCTCGTCCTGATTCTTCGTCAACCGGATTAACAGAGAAAGC ATTTCGGTCTCCGTTGAGTATAGACTTGAAGAATATCCACGGGTCTAATACCAGCTGCACTGAAGATGAGAACAGGGAGAATCCACCCATAATGCCCAAA GTACGCACGCCTAGTGGAGGAGCTGTGGATCTGTTCTCCATGTTGTTTCGAAACCGCATCATCTTCATTGGCGAAGAAATTGATTCGCGAGTGTCTCAGA AAGTTATATCGCAGCTTGTTACGCTTGCAAGTATCGACGAGGAGGCAGATATTATGATATATCTGAACAGCCCTGGTGGAAACACATACTCTGTGATGGC GATCTATGACTGCATGTGCACGATAAAGCCTAGAGTCGGTACAGTGGGCTTTGGGATGATTGCAAGCCAAGCAGTGATTCTTCTTGCTGGCGGGGAAAAA GGAATGCGGTACTCAATGCCTAATTCCCGTGTAATGTTGCAACAACCACATACTGGATGCGGGGGTCCCGTGAGAGATGTGAGGCGGCAAGTGGACGAAG CTGTTCATACTCGACAAAAAATTGACAAGATGTTTGCTGCGTTTACCGGCCAGACGCTAGAGAGAGTCCAAGAGCTCACACAAAATGATCACTTCATGTA TCCGGCAGAGGCATTGGACTTCGGCTTGATCGACAACATTCTGGGGACAAAAGAATGA
AA sequence Show only first row Show all	>Lus10011282 pacid=23149927 polypeptide=Lus10011282 locus=Lus10011282.g ID=Lus10011282.BGIv1.0 annot-version=v1.0 MAAASARLSAPPPLTISVSSRPSHPPPPPSSSSLSLFFPTRSSPCSKLVVSASSRPDSSSTGLTEKAFRSPLSIDLKNIHGSNTSCTEDENRENPPIMPK VRTPSGGAVDLFSMLFRNRIIFIGEEIDSRVSQKVISQLVTLASIDEEADIMIYLNSPGGNTYSVMAIYDCMCTIKPRVGTVGFGMIASQAVILLAGGEK GMRYSMPNSRVMLQQPHTGCGGPVRDVRRQVDEAVHTRQKIDKMFAAFTGQTLERVQELTQNDHFMYPAEALDFGLIDNILGTKE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10011282 [exp]	0	1
AT4G33480			unknown protein		Lus10020876 [exp]	1.4	0.8792
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10033809 [exp]	1.7	0.8959
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	4.6	0.8620
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10040477 [exp]	4.6	0.8788
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10017962 [exp]	8.0	0.8725
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	9.2	0.8709
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10043465 [exp]	11.7	0.8602
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	12.4	0.8448
AT4G19010			AMP-dependent synthetase and l...		Lus10022542 [exp]	12.4	0.8005
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	15.3	0.8372

Compare expression of checked genes

Lus10011282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.