Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22330 805 / 0 ATTIP49A, RIN1 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G49830 328 / 1e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G67630 325 / 2e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G75670 219 / 2e-67 DNA-directed RNA polymerases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040479 [exp] 824 / 0 AT5G22330 805 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040478 [exp] 424 / 8e-146 AT1G75670 230 / 3e-76 DNA-directed RNA polymerases (.1.2) Lus10011551 [exp] 342 / 1e-110 AT5G67630 792 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019267 [exp] 341 / 2e-110 AT5G67630 792 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199100 [exp] 807 / 0 AT5G22330 788 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G160600 [exp] 793 / 0 AT5G22330 812 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G096800 [exp] 355 / 9e-116 AT5G67630 764 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G118900 [exp] 344 / 8e-112 AT5G67630 758 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G236800 [exp] 246 / 3e-77 AT1G75670 236 / 2e-79 DNA-directed RNA polymerases (.1.2) Potri.002G024601 [exp] 235 / 4e-73 AT1G75670 228 / 3e-76 DNA-directed RNA polymerases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF03876 [flax] [poplar] SHS2_Rpb7-N SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 CL0023 [flax] [poplar] P-loop_NTPase PF06068 [flax] [poplar] TIP49 TIP49 P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10011283 pacid=23149952 polypeptide=Lus10011283 locus=Lus10011283.g ID=Lus10011283.BGIv1.0 annot-version=v1.0 ATGGAAGGATTGAACGTAGTTGATGCCGATTTGAAAGTGTACATCCACCCTTCGCAGTGCAAGAACCTCCCGCAAGCTATTCCTCGCGAGCTCAGCTCCT TGCTCTTCAAGTATAGCGATGATTACGACGGAGTGTTATTGGCTTATAACGTTAGTCTTCCTGATACAAAAGGGAGAATCCTTCCTGGTATTCATGCTTT CTTTGCCGTCAGACTCGCCGCTAAATTGCTCGTGTTTTCGCCTAAGCCTGATATGCTTTTAGAGGGGAAGGTGGTGAAAGTGAATGAAGAATCGATTCAT GCCATTGTTCTTGGCTTCTCTTCTGCTGTCATTATAGACGACGATATCCGTAAGGAGTTCAAATACAGGACGAAAAAAGGTGAAGGTTTGTTTGTCAACA GACATGACAAGCGTCATGTCATTAAGGTCGGAACTATAATCCGGTTCTCTGTGAAGAGTTTGAATGAAGAAACACTACACATCTATGGATCCTTGATGCC TGCTAACACAGGGAGCGTTAAGAGACTGGATAAAGAGTCAGAACACCACAGCTCTAAGCCAGAAAGTCTCGTAGTCAACAGCTCTTCCAAGAAAAGGAAA GAGCAGCAAGACACAGAGATGACAACAGAACACGGTAGCAGCGCTGTCAAGGATGCTCGTCAACCAAATGATGGTCGCGAGCATAATAAGAAGTCGAAGA AGCCAAGTGGAAATGCAATCCCTCTGGCGGCTGGCTTCGTCGGTCAGACTGATGCGAGAGAAGCATCGGGTCTTGTTGTTGATATGATAAGGCAGAAGAA GATGGCTGGAAAGGCTCTTCTAATGGCTGGGCCTCCTGGTACCGGAAAGACAGCTTTGGCCCTTGGGATTTCTCAGGAACTTGGAAGCAAGGTTCCGTTC TGCCCAATGGTTGGATCAGAGGTATATTCATCAGAGGTGAAGAAAACTGAAGTTCTGATGGAACATTTCCGCAGGGCCATTGGATTGCGTATCAAGGAAA ATAAAGAGGTCTATGAAGGAGAGGTGACGGAACTATCTCCAGAAGAAACTGAAAGTGTGACTGGTGGATATGGTAAAAGCATTAGCCATGTAATAATTGG TTTGAAAACTGTCAAAGGGACTAAGCAGCTGAAGCTGGATCCCACCATCTACGATGCCTTAATAAAGGAAAAGGTAGCTGTGGGAGATGTTATATACATT GAAGCAAATAGTGGTGCAGTTAAACGAGTTGGTAGAAGTGATGCTTTTGCTACGGAATTTGATCTTGAAGCAGAAGAGTATGTCCCACTTCCCAAGGGTG AAGTCCACAAAAAGAAGGAGATAGTTCAGGATGTTACCCTGCATGATCTAGATGCTGCTAATGCAAGACCTCAAGGTGGGCAAGACATATTATCTTTGAT GGGGCAGATGATGAAGCCAAGAAAGACGGAAATAACTGACAAGCTACGCCAGGAAATCAATAAGGTTGTTAATCGATACATAGATGATGGTGTGGCAGAA CTTGTTCCTGGAGTTCTGTTCATTGACGAGGTGCACATGCTGGACATGGAGTGCTTCTCGTACTTGAATCGTGCTCTGGAAAGCTCATTGTCTCCAATCG TAATCTTTGCTACTAATAGAGGAATATGTAACGTAAGAGGAACTGATATGAATAGCCCTCATGGCATACCTGTTGACTTGCTGGATCGTTTGGTGATTAT CCGCACACAAACCTATGGTCCTGCAGAAATGATACAGATATTGGCCATTCGTGCACAGGTAGAGGGACTGACAGTTGATGAAGAAAGTCTAGCATTCCTC GGCGAGATCGGTCAGCAGACATCTTTGAGGCATGCTGTTCAGCTCTTATCTCCGGCCAGCATCGTTGCGAAGATGAACGGTAGAGATAACATTTGCAAGG CGGATCTCGACGAAGTTTGCAGCTTATACCTGGACGCCAAGTCCTCAGCTAAGCTACTTCAAGATCAGCAAGAGAAGTTTATTTCTTGA
AA sequence Show only first row Show all	>Lus10011283 pacid=23149952 polypeptide=Lus10011283 locus=Lus10011283.g ID=Lus10011283.BGIv1.0 annot-version=v1.0 MEGLNVVDADLKVYIHPSQCKNLPQAIPRELSSLLFKYSDDYDGVLLAYNVSLPDTKGRILPGIHAFFAVRLAAKLLVFSPKPDMLLEGKVVKVNEESIH AIVLGFSSAVIIDDDIRKEFKYRTKKGEGLFVNRHDKRHVIKVGTIIRFSVKSLNEETLHIYGSLMPANTGSVKRLDKESEHHSSKPESLVVNSSSKKRK EQQDTEMTTEHGSSAVKDARQPNDGREHNKKSKKPSGNAIPLAAGFVGQTDAREASGLVVDMIRQKKMAGKALLMAGPPGTGKTALALGISQELGSKVPF CPMVGSEVYSSEVKKTEVLMEHFRRAIGLRIKENKEVYEGEVTELSPEETESVTGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYI EANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDDGVAE LVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVRGTDMNSPHGIPVDLLDRLVIIRTQTYGPAEMIQILAIRAQVEGLTVDEESLAFL GEIGQQTSLRHAVQLLSPASIVAKMNGRDNICKADLDEVCSLYLDAKSSAKLLQDQQEKFIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10011283 [exp]	0	1
AT5G42960			unknown protein		Lus10007162 [exp]	1.4	0.9422
AT2G19540			Transducin family protein / WD...		Lus10024403 [exp]	6.5	0.9334
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10024802 [exp]	8.6	0.9406
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10014768 [exp]	9.9	0.9026
AT1G69070			unknown protein		Lus10036815 [exp]	10.8	0.9264
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	11.3	0.9098
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10001301 [exp]	12.0	0.9285
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10032773 [exp]	13.6	0.9304
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10042031 [exp]	14.1	0.9302
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	16.9	0.9213

Compare expression of checked genes

Lus10011283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.