Plant FIBer expression Database

Lus10011284 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16190 93 / 1e-23 unknown protein
AT1G49330 92 / 7e-23 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040480
[exp]
234 / 2e-79 AT2G16190 171 / 2e-52 unknown protein
Lus10015036
[exp]
113 / 4e-32 AT1G49330 189 / 5e-59 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G113900
[exp]
117 / 1e-32 AT1G49330 199 / 1e-61 hydroxyproline-rich glycoprotein family protein (.1)
Potri.004G152600
[exp]
115 / 1e-31 AT1G49330 193 / 6e-59 hydroxyproline-rich glycoprotein family protein (.1)
Potri.016G080300
[exp]
108 / 1e-29 AT1G49330 155 / 1e-45 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence
>Lus10011284 pacid=23149939 polypeptide=Lus10011284 locus=Lus10011284.g ID=Lus10011284.BGIv1.0 annot-version=v1.0
ATGGGGATGACGGAGATTACCGAGGAGGTGGAGTGCAATAATAAGGAATGTAATTATAAACAGGAGATATCGTTTGATTTGAGCGAGAAGTTCGAGGTGG
TGTGCAGCTACATTGCGAGCAACAAAGCGTCGATGCACGATAGGGCGCCGGATCGGCGGATGCACCCGCAGCTGGAGAAGTGCGCGATGTGCGGGAAGGA
CGAATCGATGAAGCCGGTGATCGGCGGGGAGAGGGATAAAGAGGAGATCAGTTGGCTGTTTTTATTGCTAGGGGAGTGGCTAGGGTTATGTACGTTGGAG
CAGTTGAAGTATTTCTGCATGCATTGTGGGGTTCATAGGACTGGGGCAAAGAATCGGGTGGTTTACTTGACTTATTTGGAGGTTTGTAAGCAGCTTCATC
CTGACGGTCCGTTTGATCATTGA
AA sequence
>Lus10011284 pacid=23149939 polypeptide=Lus10011284 locus=Lus10011284.g ID=Lus10011284.BGIv1.0 annot-version=v1.0
MGMTEITEEVECNNKECNYKQEISFDLSEKFEVVCSYIASNKASMHDRAPDRRMHPQLEKCAMCGKDESMKPVIGGERDKEEISWLFLLLGEWLGLCTLE
QLKYFCMHCGVHRTGAKNRVVYLTYLEVCKQLHPDGPFDH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G16190 unknown protein Lus10011284
[exp]
0 1
AT5G15630 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4... Lus10021142
[exp]
1.4 1.0000
Lus10036765
[exp]
2.0 1.0000
AT3G54200 Late embryogenesis abundant (L... Lus10031554
[exp]
3.0 1.0000
Lus10006395
[exp]
3.5 1.0000
AT4G39250 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-... Lus10023568
[exp]
4.2 0.9794
AT3G55500 ATHEXPALPHA1.7,... EXPANSIN 16, expansin A16 (.1) Lus10014406
[exp]
4.5 0.9852
AT3G56710 SIB1 sigma factor binding protein 1... Lus10026165
[exp]
4.6 0.9791
Lus10038080
[exp]
5.2 0.9712
Lus10027005
[exp]
6.2 0.9644
AT4G21120 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTE... Lus10003697
[exp]
6.6 0.9684

Lus10011284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.