Lus10011285 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G49340 2914 / 0 ATPI4K ALPHA, ATPI4KALPHA Phosphatidylinositol 3- and 4-kinase family protein (.1.2)
AT1G51040 684 / 0 Protein kinase superfamily protein (.1)
AT5G09350 187 / 1e-47 PI-4KBETA2, PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 (.1)
AT5G64070 186 / 3e-47 PI-4KBETA1, PI4KBETA1 phosphatidylinositol 4-OH kinase beta1 (.1)
AT1G60490 139 / 6e-33 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040481 1913 / 0 AT1G49340 1556 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Lus10011315 333 / 6e-104 AT1G49340 307 / 9e-96 Phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Lus10000833 169 / 3e-42 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1)
Lus10030605 126 / 1e-28 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
Lus10030885 125 / 2e-28 AT1G60490 1397 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
Lus10002098 107 / 9e-23 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2)
Lus10034915 66 / 2e-12 AT1G49340 60 / 1e-11 Phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G113700 3150 / 0 AT1G49340 3062 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Potri.004G152400 3096 / 0 AT1G49340 2964 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Potri.007G109000 190 / 2e-48 AT5G64070 1412 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1)
Potri.005G059000 187 / 1e-47 AT5G64070 1497 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1)
Potri.012G075100 141 / 1e-33 AT1G60490 1388 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
Potri.009G084500 50 / 2e-05 AT1G50030 4038 / 0.0 target of rapamycin (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF00454 PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
CL0020 TPR PF00613 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain)
Representative CDS sequence
>Lus10011285 pacid=23149888 polypeptide=Lus10011285 locus=Lus10011285.g ID=Lus10011285.BGIv1.0 annot-version=v1.0
ATGGACCCGTTGATGGAGCTGTGCGAGCTCATCGCGAAGAATCCAACGCAATTCAGCGATAAACTGACGTGGCTGTGCAACCGCTGCCCGCAGCCGGAGG
CGCTGCTCGGCGGATCGCCTAGGGTTTCGAGGTCTCAGCTCAATGCGGTACTCGCGGTTGCGAGGTTCCTCTCATTGGGGACGCCAGACGCGTCCGTCGA
TCTCCGGCCGAAGTCCATCGTGTTAGAGTTCCTCCACGCGATTCCGTCGTCGTTCTCGCAGTCATTCTGGCCGCAGTCGTACACGGAGGACTCGATTGGG
TCGTTCTACGGTGAGTTCCTGGGGCATTTGGTGAGTTGCGCTGAAACGTCGGCGGATTTCGGCTCGGAGATTGCTGGCTTTTTGGGAGAGGTTGTGATGG
AAGCGGTTAATTATCACAATGCTGGTGACGGTGTGGTGATTTCGAGGGACTTTTTGCTGGCGTTGACGGAGAATTTCCCTCCGATTTTGCCTTCTGATGG
GGAGAAGCTGGTGACTTGTCTTATTGATCAGGTCTTAGGGGCAGCCGGTGATCAAGCGGGGTTAAACTCGGGTACTTCGTCGTCTCAGAGCTCGCCGTTG
AATAAAGTCAATAATCATCAGCGTAACAATGGTATTTCCAGTCCGGCAAATGATCTGAGTGGGATATCTGGCGGGTCGTCCAGTGGATTGTCTACGACGT
CAGCATTGATGAACGGAAGTGGGTTGATGTGGAAGAGTGGGTTTGATTCGATGGGCATGGGCGTAGGGTTGAACGATGGTTTGTTGCGGCAGCAAGCGAC
TTTGTTTGAGGAGGAAAGTGTGGAGGGATTGGAGAAGCATGAGATCGCATTCAAGTTGATTGCTAATGTATTGACTCATGTGAAGCTTGACGTTAAGCTT
TCGGAACAAGTAAGATTGATTGCTAAGAAGCAGCTACAGTCTCTGTCGGCGTTTTTGAAGATAAGGAAGCGCGACTGGAATGAACAAGGACAACAACTGA
AAGCTAGGGTGAACCCTAAACTCTCAGTTTATCAAGCTGCAGCTAGAATGAAGATAAGGAGCCTTGCATCCCTTGATGCTGATGGTAAAACCTTCAAAAG
ATTGGTTCTTGAAACTCTTGCATTGCTTATCGATGCTGCTGAAGCATGTCTGCTATCTGTGTGGCGGAAGTTAAGAATATGCGAAGAGCTGTTTAGGTCA
TTGCTTGCTGGAATTGCACAAATTGCTGTGAGCAGGGGTGGTCAGCCACTTCGCGTTCTTCTTATTCGTCTTAAACCCCTTGTGTTGACAGCATGTGCAC
AAGCTGATACTTGGGATAGCAATCAGGGAGCTATGTTTGAAAGTGTGATGAAGACAAGCTGCCAGATAATTGAATCTGGATGGATAAAGGACCGAGCTCC
TGTCGATACTTTTATTTTGGGATTGGCAACAAGCATACGTGAGCGGAACGACTATGATGAGCAGGCTGAGAAGGAAAAACAGGGGGTTCCTCCTGTGCAG
CTCAATCTCATACGTTTGCTAGCTGATTTGACCGTGGCTGTTAACAAGTCGGAAGTGGTTGACATGATTTTGCCACTTTTTGTTGAAAGCTTAGAGGAGG
GTGATGCTTTAACTCCTGGCATATTTCGACTTCGACTTCTTGATGCTGTATCGCGGATAGCAAGTCTAGGGTTTGAGAAATCCTATCGTGAGACAGTTGT
CCTGATGACAAGAAGTTACTTGGGTAAACTGTCAAGTGTAGGATCTGCTGAAAACACAACTTTGCCAGCAGAAGCCAATACAGAACGTGTTGAGACTCTT
CCTGCAGGATTCCGTTTGATAGCTAGTGGTCTCAAAAACCCAAAATTACGTGTAGATTACCGACATCGTCTTCTCTCTTTATGCTCAGATGTGGGGCTGG
CAGCTGAATCCAAGAGTGGAAGGAGTGGAGCAGATTTTATGGGTCCTCTACTTCCTGCTGTTGCTGAAGTCTGCTCCGATTTTGATCCTACAGTGAATGT
CGAACCGTCACTTCTGAAACTCTTCCGTAACTTGTGGTTCTATGTTGCTCTGTTTGGTTTGGCTCCACCGATTGTGAAAACTCAACAACAGGTGAAGTCC
ACATCAAGCACGCTGAATAGTGTAGGAAGCAATGGTGCACTTTCTCTTCAGGCTGTGGGTGGACCATACATGTGGAATGCACAGTGGTGTTCTGCTGTCC
AACGTATTGCTCAAGGGACTCCTCCTCTTGTTGTCAGTTCTGTCAAATGGCTTGAAGATGAACTGGAACTCAATGCACTCCACAATCCTGGAAGCCGTCA
AGCAAGTGGCAATGAGAAAGCTGCTCTAACCCAACGATCAGCTCTGTCAGCTGCATTGGGTGGCAGAGTGGAGGTTGCAGGAATGACCACAATCTCTGGT
GTTAAAGCAACATATCTGCTTGCTGTAGCTTTTCTGGAGATAATTCGGTTCAGCAGCAATGGTGGAGTTCTCAATGGGGATACCAGTTTAACTGCTTCAA
GAAGTGCCTTCAGCTGCGTATTTGAATATCTAAAAACTCCAAACTTGATGCCTGCTGTGTTTCAATGTCTGACTGCTATAGTGCATCGAGCATTTGAAGC
AGCTGTATCATGGCTGAAAGAACGGATAACTGACACTGGCAAAGATGCTGCAATCAGGGAATTAACTCTTTTTGCCCATGCATGTTTTCTGATAAAAAGC
ATGTCACTGAGAGAGGAGCACATCCGCGATATTGCTGTTAACTTGTTGACTCAGCTTCGAGATAAGTTTCCTCAGATCTTATGGAACTCGTCCTGTTTGG
ACTCCCTATTATTTTCTGTTCACAACGACTCAACTTCTACCGCTGTTAATGATCCCTCTTGGGTAGCAACTGTTCGGGCATTGTACCAGAAAATTCTCAG
GGAGTGGATCTGCATGTCGCTCTCATATGCTCCATGTACTAGCCAAGGTCTTCTTCAGGAAAAGCTCTGCAAGGCAAATACTTGGCAGAAGGCACAGCAA
ACTACTGATGTGCGGGGGGGCCGGGGCGCAGCGGCAGCTGCTGCCTCAGGAGCAAACTTGACATTGACAGAATCCTTCAACTTTGAGGTGCTCAGCACTG
GCATAGTCAGTGCAACAGTCAAGTGTAACCATGCTGGGGAAATCGCTGGTATGAGAAGGTTATATAGCAGTATTGGTGGTTTTCAATCTGGTACTCCGCC
GACAACTTTTGGTGGGGGTCTCCAGCGGTTGATAACTGGAGCATTTGCTCAACCGCCAGAGACTGAAGATGATTCTTTCAATGAGATGTTACTCAATAAG
TTTGTGCATCTACTCCAGCAATTTGTTACTGCTGCGGAGAAAGGTGGGGATGTGGAAAAATCACAGTTTCGTGATATTTGTTCTCAGTCAACAGCGTTAC
TTCTATCCAATCTGACTTCTGAATCAAAATTCAACATAGAGGGCTTTGCGCAACTGCTACGCCTTCTTTGCTGGTGTCCGGCATACATATCTACTCCAGA
TGCAATGGAGACTGGTGTCTTTATATGGACTTGGTTAGTTTCTGCAGCACCCCAACTTGGATCTCTTGTTCTTGCCGAACTCGTGGACGCCTGGTTATGG
ACTATTGACACAAAGCGAGGGCTATTTGCATATGATGTCAAGTACTCTGGACCTGCTGCGAAACTAAGGCCTCAGCTCGCTCCTGGAGAACCAGAGCCAC
AGCCTGAAATTGATCCTGTTGAACAGATCCTCGCTCATAGACTTTGGCTTGGCTTTTTCATTGATCGGTTTGAGGTAGTGCGGCATAACAGTGGCGAGCA
ACTCTTGCTCTTGGGTAGGCTATTGCAAGGGACAATGAGGTTACCTTGGAATTTTTCACGCCATCCTGCTGCTACTGGTGCCTTTTTCACAGTCATGCTC
CTTGGGCTCAAATTCAGCTCATGTCATTCTCAGGGAAACCTGCAGAATTATAAAACCGGGCTTCAACTACTGGAAGATCGGATTTATAGAGCCTGTTTGG
GCTGGTTTGCTTTTGAACCTGAGTGGTACAATGTGAACTATATGAATTTTGCTCAGAGTGAGGCTCAATCTGTATCAGTATTTGTTCACTATCTTTCAAA
TGAACGAGGGGATGCTCCTGTATCTGACTCTAAGGGACGCGGGAGTGACAATGGAAGTTCGTTGGTTGATATGAATGATGAACATCACCCTGTGTGGGGT
CACATGGAGAATTATGCTACCGGAAGGGAAAAGCGGAAACAGTTACTATTGATGCTATGTCAGCATGAGGCTGATAGGCTTGAAGTGTGGGCGCAACCTA
CTAACTCCAAGGAAAATGTTTCGCGTCCCAAAATCAGCTCAGATAAATGGATAGAATATGCTAGGACAGCTTTCTCCGTGGATCCCCATATTGCTTTGTG
CATGCCGTCAAGGTTCCCTGCAAATACTACTTTGAAGGCTGAAGTAACACAGTTGGTCCAGTCACATATTCTTGACGTGCGCACTTTACCAGAAGCACTT
CCGTACTTTGTCACCCCAAAAGCTGTTGATGAAGATTCAGTGCTTTTGCAACAACTGCCACACTGGGCTGGTTGTACAATAACACAAGCACTAGAGTTCC
TAACTCCTGCATACAAGGGTCATCCTCGTGTGATGGCTTATGTTCTGAGAGTTTTGGAGTCTTATCCTCCTGAGCGTGTAACATTTTTCATGCCACAATT
AGTCCAGTCTCTGCGGTATGATGATGGGAAGTTAGTCGAAGGATATTTGTTGAGAGCAGCTCAGAGAAGTGATATCTTTGCACATATTCTGATTTGGCAT
TTGCAGGGAGAACAACCTGAAACAGATGCAGTGAAAGATGGTGCAGTCCCAAAGGATGATGCCTTTCAAGAACTCTTGCCTGTTGTTCGTGAGCATATCG
TTGATGGTTTCAATGACAAGGCCCGTGATGTTTTCGAAAGGGAGTTTGACTTTTTCGATCAAGTTACGTCAATCTCAGGTGTCCTCCTTCCACTCCCCAA
GGATGAGCGTCGGGCTGGTATTCGGACGGAATTGGAGAAAATCAAAATGCAAGGAGAAGATCTTTATTTACCAACTGCAACGAACAAACTTGTCAGAGGT
ATCCGGGTGGATAGTGGCATACCCTTGCAATCAGCAGCGAAAGTCCCGATCATGGTTACCTTTGATGTGGTTGATCGTGATGGCAGCCCTAATGATATTA
AGCCTCAAGCTTGCATTTTCAAGGTTGGAGATGATTGCAGACAAGATGTGCTTGCCCTTCAAGTGATAACGCTTCTTAGAGACATCTTTGGTGCTGTCGG
CCTTAATCTCTATTTGTTTCCCTACGGTGTCTTGCCAACGGGGCCAGGGAGAGGTATTATCGAGGTTGTGCCTAACTCACGGAGTCGAAGTCAGATGGGC
GAAACAACAGATGGTGGTTTGTACGAGATCTTTCAGCAGGACTTTGGTCCTGTCGGCTCCCCTAGTTTCGAAGCCGCTCGTGAAAACTTCATCATCAGCA
GCGCCGGTTATGCAGTTGCCAGTCTTCTACTCCAACCGAAGGACAGACACAACGGGAACTTGCTTTTCGACAGCGATGGGAGGCTCGTCCACATTGATTT
TGGATTCATATTCGAAATCTCCCCCGGTGGGAACATGCGGTTCGAGAGTGCACATTTCAAACTCAGCCACGAGATGACTCAGTTACTCGACCCATCAGGC
GTCATGAAGAGCGAGACATGGCACCAATTCGTCAGCCTGTGCGTGAAAGGGTACCTCGCTGCACGCAGGTACATGATGATGCTCGACAGTGGCCTACCTT
GCTTCAGTCGAGGAGACCCGATCGGGAACCTCCGGAAAAGGTTCCACCCGGAAATGAGCGAGAGGGAAGCCGCGAATTTCATGATCCATGTCTGCACAGA
CGCCTACAACAAATGGTCAACTGCAGGCTACGACTTGATACAGTATCTGCAGCAAGGAATTGAGAAGTGA
AA sequence
>Lus10011285 pacid=23149888 polypeptide=Lus10011285 locus=Lus10011285.g ID=Lus10011285.BGIv1.0 annot-version=v1.0
MDPLMELCELIAKNPTQFSDKLTWLCNRCPQPEALLGGSPRVSRSQLNAVLAVARFLSLGTPDASVDLRPKSIVLEFLHAIPSSFSQSFWPQSYTEDSIG
SFYGEFLGHLVSCAETSADFGSEIAGFLGEVVMEAVNYHNAGDGVVISRDFLLALTENFPPILPSDGEKLVTCLIDQVLGAAGDQAGLNSGTSSSQSSPL
NKVNNHQRNNGISSPANDLSGISGGSSSGLSTTSALMNGSGLMWKSGFDSMGMGVGLNDGLLRQQATLFEEESVEGLEKHEIAFKLIANVLTHVKLDVKL
SEQVRLIAKKQLQSLSAFLKIRKRDWNEQGQQLKARVNPKLSVYQAAARMKIRSLASLDADGKTFKRLVLETLALLIDAAEACLLSVWRKLRICEELFRS
LLAGIAQIAVSRGGQPLRVLLIRLKPLVLTACAQADTWDSNQGAMFESVMKTSCQIIESGWIKDRAPVDTFILGLATSIRERNDYDEQAEKEKQGVPPVQ
LNLIRLLADLTVAVNKSEVVDMILPLFVESLEEGDALTPGIFRLRLLDAVSRIASLGFEKSYRETVVLMTRSYLGKLSSVGSAENTTLPAEANTERVETL
PAGFRLIASGLKNPKLRVDYRHRLLSLCSDVGLAAESKSGRSGADFMGPLLPAVAEVCSDFDPTVNVEPSLLKLFRNLWFYVALFGLAPPIVKTQQQVKS
TSSTLNSVGSNGALSLQAVGGPYMWNAQWCSAVQRIAQGTPPLVVSSVKWLEDELELNALHNPGSRQASGNEKAALTQRSALSAALGGRVEVAGMTTISG
VKATYLLAVAFLEIIRFSSNGGVLNGDTSLTASRSAFSCVFEYLKTPNLMPAVFQCLTAIVHRAFEAAVSWLKERITDTGKDAAIRELTLFAHACFLIKS
MSLREEHIRDIAVNLLTQLRDKFPQILWNSSCLDSLLFSVHNDSTSTAVNDPSWVATVRALYQKILREWICMSLSYAPCTSQGLLQEKLCKANTWQKAQQ
TTDVRGGRGAAAAAASGANLTLTESFNFEVLSTGIVSATVKCNHAGEIAGMRRLYSSIGGFQSGTPPTTFGGGLQRLITGAFAQPPETEDDSFNEMLLNK
FVHLLQQFVTAAEKGGDVEKSQFRDICSQSTALLLSNLTSESKFNIEGFAQLLRLLCWCPAYISTPDAMETGVFIWTWLVSAAPQLGSLVLAELVDAWLW
TIDTKRGLFAYDVKYSGPAAKLRPQLAPGEPEPQPEIDPVEQILAHRLWLGFFIDRFEVVRHNSGEQLLLLGRLLQGTMRLPWNFSRHPAATGAFFTVML
LGLKFSSCHSQGNLQNYKTGLQLLEDRIYRACLGWFAFEPEWYNVNYMNFAQSEAQSVSVFVHYLSNERGDAPVSDSKGRGSDNGSSLVDMNDEHHPVWG
HMENYATGREKRKQLLLMLCQHEADRLEVWAQPTNSKENVSRPKISSDKWIEYARTAFSVDPHIALCMPSRFPANTTLKAEVTQLVQSHILDVRTLPEAL
PYFVTPKAVDEDSVLLQQLPHWAGCTITQALEFLTPAYKGHPRVMAYVLRVLESYPPERVTFFMPQLVQSLRYDDGKLVEGYLLRAAQRSDIFAHILIWH
LQGEQPETDAVKDGAVPKDDAFQELLPVVREHIVDGFNDKARDVFEREFDFFDQVTSISGVLLPLPKDERRAGIRTELEKIKMQGEDLYLPTATNKLVRG
IRVDSGIPLQSAAKVPIMVTFDVVDRDGSPNDIKPQACIFKVGDDCRQDVLALQVITLLRDIFGAVGLNLYLFPYGVLPTGPGRGIIEVVPNSRSRSQMG
ETTDGGLYEIFQQDFGPVGSPSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDSDGRLVHIDFGFIFEISPGGNMRFESAHFKLSHEMTQLLDPSG
VMKSETWHQFVSLCVKGYLAARRYMMMLDSGLPCFSRGDPIGNLRKRFHPEMSEREAANFMIHVCTDAYNKWSTAGYDLIQYLQQGIEK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G49340 ATPI4K ALPHA, A... Phosphatidylinositol 3- and 4-... Lus10011285 0 1
AT1G49340 ATPI4K ALPHA, A... Phosphatidylinositol 3- and 4-... Lus10040481 1.0 0.9879
AT5G06600 AtUBP12, UBP12 ubiquitin-specific protease 12... Lus10008949 1.4 0.9679
AT3G08530 Clathrin, heavy chain (.1) Lus10037845 2.4 0.9655
AT2G06210 VIP6, ELF8 VERNALIZATION INDEPENDENCE 6, ... Lus10000471 3.9 0.9523
AT1G64570 DUO3 DUO POLLEN 3, Homeodomain-like... Lus10001147 4.0 0.9286
AT4G14920 Acyl-CoA N-acyltransferase wit... Lus10006110 4.8 0.9226
AT2G33540 CPL3, ATCPL3 C-terminal domain phosphatase-... Lus10036271 4.9 0.9370
AT3G43300 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFF... Lus10038084 5.7 0.9574
AT1G19220 ARF IAA22, ARF11, A... indole-3-acetic acid inducible... Lus10017680 6.0 0.9278
AT3G60240 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, ... Lus10042856 7.7 0.9287

Lus10011285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.