Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 667 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 654 / 0 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 644 / 0 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 538 / 0 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 516 / 2e-180 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 436 / 1e-148 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 201 / 5e-58 ATINT1 inositol transporter 1 (.1) AT5G59250 190 / 1e-53 Major facilitator superfamily protein (.1) AT5G16150 188 / 6e-53 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT3G19930 187 / 8e-53 ATSTP4, STP4 sugar transporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040482 [exp] 898 / 0 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 894 / 0 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 825 / 0 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 690 / 0 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 684 / 0 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 624 / 0 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 566 / 0 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10026032 [exp] 516 / 2e-180 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 518 / 9e-176 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113600 [exp] 767 / 0 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 735 / 0 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 717 / 0 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 545 / 0 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 458 / 9e-158 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 446 / 1e-152 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 426 / 8e-145 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.017G032200 [exp] 215 / 1e-63 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 215 / 2e-63 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.019G055600 [exp] 189 / 6e-54 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10011287 pacid=23149945 polypeptide=Lus10011287 locus=Lus10011287.g ID=Lus10011287.BGIv1.0 annot-version=v1.0 ATGGCCCCTCCAAACGAGCTGGCCGATTTCGACCCTCCGGCGAGGCCCAAGCAGAACAAGTTCGCCTTCGCGTGTGCTATATTGGTTTCCATGACTTCCA TCTTACTTGGCTATGATATCGGAGTCATGAGCGGAGCGGCTAAGTTCATCAAGGATGAGTTCAAGATCTCGGATGTGAAAATAGAGTTGCTGATCGGATT GCTGAACATTTACTCCCTCGTCGGATCTGCCGCCGCCGGCAGGACGTCCGACTGGATCGGACGGCGGTACACCATCGTCGTGGCCGGCGTGATTTTCTTC GTCGGATCACTGCTCATGGGATTCGCTACCAACTACGCGTTCCTCATGGTCGGCCGATTCGTCGCCGGAATCGGCGTCGGATATGCTCTGGTGATTGCGC CGGTGTACACCGCCGAGGTGTCCCCTGCTTCTTCCCGCGGCTTCCTCACCTCTTTCCCCGAGGTTTTCATAAACGTCGGCATCTTACTCGGCTACGTCTC CAACTACGCATTTTCCCACCTGCCGGACCACCTCGGCTGGAGATTCATGCTTGGTATCGGCGCAATCCCCTCTGTCTTCCTCGCCGTCGGCGTTCTCGCC ATGCCCGAATCCCCGCGGTGGCTTGTGCTACAGGGCCGCCTTGGCGACGCCAAGAAAGTCCTGGACAAGACCTCCGATTCGCCGGAGGAATCTAGATCCA GGCTCGCTGACATCAAAGCCGCTGCCGGAATCCCCGAATCCTGCAACGACGACGTCGTTTCCGTCAGCAAACAGAGCCACGGTGAGGGAGTGTGGAAGGA GCTGATCCTCAGTCCCACTCCGGCGGTCCGACACATCATGGTCTGCGCAATTGGGCTCTTCTTCTTCCAGGAGGCGTCCGGGATCGATGCCGTTGTTCTT TACAGCCCAAGGATCTTCGAGAAGGCCGGGATTACGTCCTCCAGTAAGCAGCTGCTCGCGACGATTGCTGTTGGGTTCACCAAGACCGTGTTTATCCTCG TCGCCACTTTCTTGATCGACAGAATCGGCCGCCGGCCACTACTCATGGGAAGCCTCGGAGGGATGGTGATCTCGTTAGTAACATTAGGTGGGTCCTTGGA AGTGATCAACCGATCCACGGGGAAAGTGAATTGGGCAATCGGACTCTGCATCTCCATGGTGCTATCCTTCGTGGCATTCTTCTCAATCGGGATGGGACCC GTCACGTGGGTATATGGCTCGGAGATCTTCCCGCTCCGGCTGCGGGCACAGGGCGCCGGAATGGGGGTTGCTGTGCAAAGAGTCACTAGCGGTGTGATCA CTACGACGTTCATCTCGATGTACAAGGCCATGACGATCAGCGGAGTGTTCTTCTTGTTCTCAGCATTGGCGGCTGCGGCTTTTGTTTTCGTCTTCAGCTG CTTCCCGGAGACTCAGGGGAGGCCATTGGAGGATATGGAGGTTCTGTTTGGGAGCTTCTTTGGATGGAGGGAGAAAGCTGAGGAATTGAAGGTCGATGAA GGGAAAAGTAATGGGACTGAAGTTGAGTTAGAGAGAAAATCGGTGACTGGAATTTAA
AA sequence Show only first row Show all	>Lus10011287 pacid=23149945 polypeptide=Lus10011287 locus=Lus10011287.g ID=Lus10011287.BGIv1.0 annot-version=v1.0 MAPPNELADFDPPARPKQNKFAFACAILVSMTSILLGYDIGVMSGAAKFIKDEFKISDVKIELLIGLLNIYSLVGSAAAGRTSDWIGRRYTIVVAGVIFF VGSLLMGFATNYAFLMVGRFVAGIGVGYALVIAPVYTAEVSPASSRGFLTSFPEVFINVGILLGYVSNYAFSHLPDHLGWRFMLGIGAIPSVFLAVGVLA MPESPRWLVLQGRLGDAKKVLDKTSDSPEESRSRLADIKAAAGIPESCNDDVVSVSKQSHGEGVWKELILSPTPAVRHIMVCAIGLFFFQEASGIDAVVL YSPRIFEKAGITSSSKQLLATIAVGFTKTVFILVATFLIDRIGRRPLLMGSLGGMVISLVTLGGSLEVINRSTGKVNWAIGLCISMVLSFVAFFSIGMGP VTWVYGSEIFPLRLRAQGAGMGVAVQRVTSGVITTTFISMYKAMTISGVFFLFSALAAAAFVFVFSCFPETQGRPLEDMEVLFGSFFGWREKAEELKVDE GKSNGTEVELERKSVTGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10011287 [exp]	0	1
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	1.0	0.8011
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	4.9	0.7334
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009673 [exp]	5.5	0.7230
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	14.1	0.7018
AT4G34760			SAUR-like auxin-responsive pro...		Lus10041921 [exp]	16.5	0.6778
AT3G27250			unknown protein		Lus10014610 [exp]	17.0	0.6955
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Lus10042870 [exp]	18.5	0.7203
AT1G27990			unknown protein		Lus10037043 [exp]	20.0	0.6561
AT1G26920			unknown protein		Lus10012840 [exp]	36.7	0.6383
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10007223 [exp]	36.7	0.6437

Compare expression of checked genes

Lus10011287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.