Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 678 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 657 / 0 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 650 / 0 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 547 / 0 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 521 / 0 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 449 / 1e-153 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 210 / 1e-61 ATINT1 inositol transporter 1 (.1) AT5G17010 193 / 3e-55 Major facilitator superfamily protein (.1.2.3.4) AT5G16150 191 / 3e-54 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT5G59250 190 / 1e-53 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040482 [exp] 954 / 0 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 867 / 0 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 838 / 0 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 689 / 0 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 687 / 0 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 635 / 0 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 573 / 0 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10026032 [exp] 521 / 0 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 524 / 3e-178 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113600 [exp] 784 / 0 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 755 / 0 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 742 / 0 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 549 / 0 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 480 / 1e-166 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 459 / 8e-158 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 440 / 3e-150 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.007G126800 [exp] 207 / 2e-60 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 205 / 9e-60 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.019G055600 [exp] 196 / 3e-56 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10011288 pacid=23149949 polypeptide=Lus10011288 locus=Lus10011288.g ID=Lus10011288.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCAAACGCCGACGGCAACAAGTTGGAAGATTTCGACCCTCCGGCAAAGCCCAAGAGGAACAAGTTCGCCTTCGCGTGTGCTATATTGGCTT CCATGACTTCCATCTTACTGGGCTACGATATTGGAGTGATGAGCGGAGCGGCGAAGTTCATCAAGGACGACTTCAAGATCTCGGACGTGCAAGTGGAGGT GCTGGTCGGAATGCTGAACATTTACTCCCTCATCGGATCTGCCGCCGCCGGCAGGACGTCCGACTGGATTGGACGGCGGTACACCATAGTTGTCGCTGGC GCGATTTTCTTCGTCGGAGCACTGCTCATGGGATTTGCTACCAACTACGCGTTCCTCACGGTCGGCCGATTCGTTGCTGGAATAGGCGTCGGATTCGCTC TTATGATTGCGCCGGTGTACACCGCCGAGGTGTCCCCTGCTTCTTCCCGTGGCTTCCTCACCTCTTTCCCCGAGGTTTTCATAAACGCCGGCATCTTACT TGGCTACGTCTCCAACTATGCCTTCTCCCACTTACCGGAACACCTCGGCTGGAGATTCATGCTCGGCGTCGGCGCTATCCCCTCCGTCTTTCTCGCCATC GGCGTCCTCGCCATGCCGGAGTCCCCACGGTGGCTAGTACTACAGGGCCGCCTCGGCGACGCCAAGAAGGTCCTGGACAAGACCTCCGATTCGCTGGAGG AATCCAAATCCAGGCTCGCCGACATCAAAGCCGCCGTCGGAATCCCCGAATCCTGCAACGACGATGTCGTTTCCGTCAGCAAACAGAGCCACGGAGAGGG AGTGTGGAAGGAGCTGCTACTCAGTCCCACTCCGGCAGTCCGGCACATCTTGATTTGCGCAATTGGGATTCACTTCTTCCAGCAGGCGTCTGGGATCGAC GCCGTTGTTCTTTACAGCCCAAGGATCTTCGAGAAGGCCGGAATTACCTCCTCCGGAAAGCAGCTGATCGCGACGATTGCTGTCGGGTTCACGAAGACCG TGTTCATCCTCGTGGCCACTTTCTTGCTCGACAGAATCGGCCGCCGGCCGTTACTCCTGGGAAGCGTCGGCGGGATGGTGATCTCTTTAATAACCTTAGG CTGGTCCTTGGAAGTGATCGACCACTCCAAGGGGAAAGTGAACTGGGCAATCGGACTCTGCATCTCCATGGTGTTGTCCTTCGTGGCATTCTTCTCAATC GGGATGGGACCCATAACGTGGGTCTACAGCTCGGAGATCTTCCCGCTCCGGCTGCGGGCACAGGGCACCGGAATGGGGGTCGCAGTTAACAGAGTCATCA GCGGCGTGATCTCGACGACGTTCATCTCGCTGTACAAGGCAATGACAATCAGCGGCGCGTTTTTCTTGTTCGCGGGGTTGGCGGCGGTGGCGTTTGTTTT CTTCTTCAGCTGCTACCCGGAGACGCAGGGAAGGACGCTGGAGGACATGGAGGTTTTGTTTGGGAGCTTATTTGGGTGGAGGAAGAAAGCAGAGGAGTTG AAGATGGAAGAAGAGAAAAGTAAGAGGACTGAAGTTGAGTTAGAGAGAAAGTAG
AA sequence Show only first row Show all	>Lus10011288 pacid=23149949 polypeptide=Lus10011288 locus=Lus10011288.g ID=Lus10011288.BGIv1.0 annot-version=v1.0 MAPPNADGNKLEDFDPPAKPKRNKFAFACAILASMTSILLGYDIGVMSGAAKFIKDDFKISDVQVEVLVGMLNIYSLIGSAAAGRTSDWIGRRYTIVVAG AIFFVGALLMGFATNYAFLTVGRFVAGIGVGFALMIAPVYTAEVSPASSRGFLTSFPEVFINAGILLGYVSNYAFSHLPEHLGWRFMLGVGAIPSVFLAI GVLAMPESPRWLVLQGRLGDAKKVLDKTSDSLEESKSRLADIKAAVGIPESCNDDVVSVSKQSHGEGVWKELLLSPTPAVRHILICAIGIHFFQQASGID AVVLYSPRIFEKAGITSSGKQLIATIAVGFTKTVFILVATFLLDRIGRRPLLLGSVGGMVISLITLGWSLEVIDHSKGKVNWAIGLCISMVLSFVAFFSI GMGPITWVYSSEIFPLRLRAQGTGMGVAVNRVISGVISTTFISLYKAMTISGAFFLFAGLAAVAFVFFFSCYPETQGRTLEDMEVLFGSLFGWRKKAEEL KMEEEKSKRTEVELERK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10011288 [exp]	0	1
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	2.8	0.9350
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	5.5	0.9154
AT5G14860			UDP-Glycosyltransferase superf...		Lus10022222 [exp]	6.5	0.9036
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	6.8	0.9188
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10018852 [exp]	6.9	0.8838
AT4G32480			Protein of unknown function (D...		Lus10041046 [exp]	8.9	0.8945
AT2G15020			unknown protein		Lus10026592 [exp]	10.8	0.8910
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	11.8	0.9078
AT5G48290			Heavy metal transport/detoxifi...		Lus10025182 [exp]	12.8	0.8785
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032215 [exp]	13.3	0.7787

Compare expression of checked genes

Lus10011288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.