Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07530 546 / 0 unknown protein AT2G01730 49 / 7e-06 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) AT5G23880 47 / 3e-05 ATCPSF100, EMB1265, ESP5, CPSF100 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040483 [exp] 1072 / 0 AT3G07530 548 / 0.0 unknown protein Lus10035061 [exp] 49 / 1e-05 AT5G23880 1182 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10035763 [exp] 48 / 2e-05 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10037338 [exp] 48 / 2e-05 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10021705 [exp] 45 / 0.0002 AT5G23880 1202 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236000 [exp] 645 / 0 AT3G07530 674 / 0.0 unknown protein Potri.001G231800 [exp] 51 / 2e-06 AT5G23880 1172 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Potri.010G106200 [exp] 45 / 0.0002 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF10996 [flax] [poplar] Beta-Casp Beta-Casp domain
Representative CDS sequence Show only first row Show all	>Lus10011289 pacid=23149937 polypeptide=Lus10011289 locus=Lus10011289.g ID=Lus10011289.BGIv1.0 annot-version=v1.0 ATGGTGACTCAGACATGCTTAAGCAGAGGCCATGGCTATCATATCCCACCTTGTCACATCCTAGATGATGTCCATGGTTTCAGAATATTACTCGACTGCC CACTTGACCTTTCTGCACTCTCGGTCTTCTCCCCTTTGCTACACCATGGACAAACTTTGGACGATTCATCATCAGTACATGATTCTATTCACAAGAGGCA GAAAACTCAAAAGCCACTAGATGCAAGAGACTTGATTCGTGATGAACCTTGGTATAAAACAGCAAAGAATCTCCACCTCTGGGACCCTTGTTCCATTGAT GTTGTGCTTATTTCAAGTGCCATTGGAATGCTTGGCTTGCCCTTTCTTACTCGCACTCGAGGCTTCTGTGCAAAGATATATGTGACTGATGCAGCATCAA GGCTTGCGCAGCTAATGATGGAGGATCTTGTCTCGATGAATGCGGAGTTTCTCGAGTTTTATGGTCCTGGGGAGTCTGGTGGTCCTCCATGGCTGAGATG GGAAGAGCTTGAGTTGCTCCAGCCTGAGTTAAAGGAGGTAGTGGTTGGCAAGGATGGTACTGATATGGCTGCTTGGATGCCACTTTACAGTTCAGCAGAT GTAATGGATTGTATGAAGAAAATGCAAAGGCTTAAATATGCAGAAGCTGCATGCTACAATGGAACATTGGTCTTGAAACCATTCAGCTCAGGCTCAGAGA TAGGCTCCTGCAATTGGACAATCAACGGTCCCAAAACGAATATCTCGTGGATTTCGTGTTCAGTATTTGTTTCTCCACACGCTATGGAGTTTGATTATAA CTCGTTACGGGGACGAGATTTAGTTCTATATTCAGATGTGCAATGCCAGCCTGCAATGGAAACAGTTCAAGAAAACGATGGTGCTAATTCTGCAATGGAC TTGAATGAATGCTTGTCGAACATTAATGAGAGCTTAGAAGAAAAGGAGAAAATAACTTTCATCCTCTCGTGTATTCTCCAGTCGGTTCAAGCGGGCGGTT CAGTCGTTATACCTTTTAATCGGCTCGGGATTCTTGTTCAGCTGTTGGAAGAGATACCGAAACTCCTCGAGTCTATGGATACAGACGTTCCAATTTACTT CATCTCTTCTGCAGCTGTTGAACTATTAGCATTCATGAACACTATACCTGAATGGGTATGCAAACCACGCCAAGAGAAGCTTTTTTCGGGGGAAGCTATG TTTCCGCATGATGAACTTGTGAAGAGCAAGAAGCTTCATGTGTTTTCAGCTATTCACTCTCCTGAACTACTAACGACTTGGCAGGAACAATGCATCGTAT TTGCTCCACATTGGAGTCTTAGACTTGGTCCAATTGTTCATATGTTTCGGCGTTGGAGTAGGGACGAGAATTCTCTACTTGTATTGGAGGATGGGATTGA TGCCGAAATTGCCCTCTTGCCTTTCAAGCCAGTGGAGATGAAGGTTCTGCAGTGCTCATTTCTTCATGAGAGAAAACTGCAAGAAACCGAGTATCTGCTG AAGATACTGCAACCAAAGACTCTGGTGGTAAGCCGTTCGGACTTCCCTGATGATTTGAAGCAGAAGCTAGATGTTTCGAACTCGAGTTCCCAGTCATCTC CAACAGTCCTCTACTTCACCGAAGGAGAAACATTATCATTACCAAGCTCAGCAGAAGATGGGAACACGGACCTCGAAATCGCATCAGATTTGGCCACCAG GTTCGCGTGGCAGAGGTTAAAACAGCACAGCATCACATGGCTGGAAGGAGAGTTAGTGATGCAGCAAGGGAAATTCCGGTTGATACTGCCAAGCGTTTCG GGTTCATCATCATCGGAGAGGCCGTTGTAA
AA sequence Show only first row Show all	>Lus10011289 pacid=23149937 polypeptide=Lus10011289 locus=Lus10011289.g ID=Lus10011289.BGIv1.0 annot-version=v1.0 MVTQTCLSRGHGYHIPPCHILDDVHGFRILLDCPLDLSALSVFSPLLHHGQTLDDSSSVHDSIHKRQKTQKPLDARDLIRDEPWYKTAKNLHLWDPCSID VVLISSAIGMLGLPFLTRTRGFCAKIYVTDAASRLAQLMMEDLVSMNAEFLEFYGPGESGGPPWLRWEELELLQPELKEVVVGKDGTDMAAWMPLYSSAD VMDCMKKMQRLKYAEAACYNGTLVLKPFSSGSEIGSCNWTINGPKTNISWISCSVFVSPHAMEFDYNSLRGRDLVLYSDVQCQPAMETVQENDGANSAMD LNECLSNINESLEEKEKITFILSCILQSVQAGGSVVIPFNRLGILVQLLEEIPKLLESMDTDVPIYFISSAAVELLAFMNTIPEWVCKPRQEKLFSGEAM FPHDELVKSKKLHVFSAIHSPELLTTWQEQCIVFAPHWSLRLGPIVHMFRRWSRDENSLLVLEDGIDAEIALLPFKPVEMKVLQCSFLHERKLQETEYLL KILQPKTLVVSRSDFPDDLKQKLDVSNSSSQSSPTVLYFTEGETLSLPSSAEDGNTDLEIASDLATRFAWQRLKQHSITWLEGELVMQQGKFRLILPSVS GSSSSERPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07530			unknown protein		Lus10011289 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10026201 [exp]	6.0	0.7615
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	9.8	0.8087
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10033903 [exp]	10.2	0.8027
AT1G73970			unknown protein		Lus10036972 [exp]	14.7	0.7993
AT1G73090			unknown protein		Lus10037331 [exp]	15.3	0.7660
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	15.5	0.8072
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	26.5	0.7901
AT3G54460			SNF2 domain-containing protein...		Lus10024158 [exp]	30.9	0.7816
AT1G58025			DNA-binding bromodomain-contai...		Lus10037368 [exp]	33.3	0.7638
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10009912 [exp]	38.2	0.7543

Compare expression of checked genes

Lus10011289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.