Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64330 416 / 2e-140 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT4G31820 222 / 2e-65 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT5G67440 212 / 7e-62 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT1G30440 213 / 2e-61 Phototropic-responsive NPH3 family protein (.1) AT5G10250 207 / 5e-60 DOT3 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) AT5G03250 207 / 6e-60 Phototropic-responsive NPH3 family protein (.1) AT1G03010 188 / 2e-52 Phototropic-responsive NPH3 family protein (.1) AT4G37590 184 / 2e-51 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT5G48800 184 / 5e-51 Phototropic-responsive NPH3 family protein (.1) AT2G47860 182 / 1e-50 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040484 [exp] 843 / 0 AT5G64330 440 / 5e-150 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10019290 [exp] 239 / 3e-73 AT5G67385 402 / 6e-135 Phototropic-responsive NPH3 family protein (.1) Lus10011532 [exp] 229 / 3e-69 AT5G67385 427 / 2e-144 Phototropic-responsive NPH3 family protein (.1) Lus10026046 [exp] 229 / 3e-67 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 226 / 2e-66 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 209 / 3e-60 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 205 / 6e-59 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 204 / 1e-58 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 204 / 3e-58 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G048200 [exp] 444 / 4e-150 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 439 / 6e-148 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.005G075400 [exp] 247 / 2e-74 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.013G024400 [exp] 237 / 2e-71 AT5G10250 331 / 5e-106 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.007G093000 [exp] 234 / 1e-69 AT5G10250 706 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 218 / 1e-63 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 214 / 3e-62 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 213 / 5e-62 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 206 / 3e-59 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 204 / 9e-59 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10011290 pacid=23149944 polypeptide=Lus10011290 locus=Lus10011290.g ID=Lus10011290.BGIv1.0 annot-version=v1.0 ATGTGGGATTCCGAGAGTGATTCCGGCGCCGCCGCCCGAGATTACGGCGGAAACGGAGGAGGAGGAGGAGCTAATATTCCCTCCACCAAACCCCCACTCC ACACTGATGGGTTTGAGCTCCGACACCGTTCCTGGCATGTTGCTACTGATATCCCAAGCGACTTCCTGGTTCAAATTGGAGATGTTCAGTTCCACCTCCA CAGGTACCCTTTGCTATCGAGGAGCGGGAAGATGAACAGAGTGATATATGAATCCCGCGAGCCAGAAGTGAGCAACGTCGTGATGGACGACATCCCTGGA GGCTCGGAGGCATTCGAGCTCGCTGCCAAGTTCTGCTACGGAATTGCAGTCGACCTGACGGCAGCCAACATTTCGGGGCTAAGGTGCACGGCGGAGTACT TGGAAATGACCGAGGATTTGGAGGAAGGCAACCTCATTTTCAAAACCGAAGCGTTCCTCAGCTACGTGGTTCTCTCCTCGTGGAGGGACTCGATCGTCGT GCTAAAAAACTGCGAGAATCTCTCGCCCTGGGCGGAGAATCTGCAGATCGTGAGGCGGTGCAGCGAGTCGATAGCTTGGAAAGCTTGCGCGAACCCGAAA GGGATCCGGTGGGCTTACACCGGGAAACCAATCAAGGTCTCTAGTCCTAATAAGTGGAGTAGTAGTAGTCCCGCAGATGGCTCGAGTCCGAGTCGAACCA CTGTTCCACCGGATTGGTGGTTCGAGGACGTTTCGATCCTAAGGATCGACCATTTCGTGAGGGTTGTCACGGCGATCAAGGTGAAAGGAATGCGTTTCGA GTTGGTTGGTGCTTCCATTATGCACTATGCTGCCAAATGGCTACCGGGATTGGTCAAAGATGGAGTTGACCAACATCCGGAAGCTGCACATCCGACGCTG TCGGAGCACGAACGGAAGAGGCTATGCAGGGTGATGGACTGCCAGAAGCTATCGATCGACGCGTGCATGCACGCGGCCCAGAACGAGAGGCTGCCGCTGA GGGTAGTCGTACAAGTCCTGTTCTCAGAACAGGTGAAAATCAGCAATGCCATGGCGGCAAACAACAACAGCTTGAAAGAAACGACAACAACGGGTGATAC GGCGTCGTACTACCAGCCGATGGTGGCGGCAAACAACAGTAGGAAAACATTGCTGGAAGGGACACCAGTTTCGTTCCAAGAAGGGTGGTCGACGGCGAAG AAGGACATAAACACGTTGAAGTTCGAGCTGGAAACCGTGAAGGCCAAGTACCTTGAGCTGCAAGGCGAGTTGGAGACATTGCAGAGGCAATTTGAGAAGG CGACTTCGACTTCGAGTCACAAGAAACATGGATCGTCGGCGTGGGCTGCTGGTTGGAAGAAGCTGAGCATGTTTGGAAAGGCGGCGGCGATGGATGGTAA TGAAAGCGGAGGCGAACAAAATCATCATCATCATCATCATCAACGGGAGCAGCAGGGGAGCAGGAAGACTCCTGCTAGGCGATGGAGAAACTCCATTTCC TGA
AA sequence Show only first row Show all	>Lus10011290 pacid=23149944 polypeptide=Lus10011290 locus=Lus10011290.g ID=Lus10011290.BGIv1.0 annot-version=v1.0 MWDSESDSGAAARDYGGNGGGGGANIPSTKPPLHTDGFELRHRSWHVATDIPSDFLVQIGDVQFHLHRYPLLSRSGKMNRVIYESREPEVSNVVMDDIPG GSEAFELAAKFCYGIAVDLTAANISGLRCTAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIVVLKNCENLSPWAENLQIVRRCSESIAWKACANPK GIRWAYTGKPIKVSSPNKWSSSSPADGSSPSRTTVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELVGASIMHYAAKWLPGLVKDGVDQHPEAAHPTL SEHERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNAMAANNNSLKETTTTGDTASYYQPMVAANNSRKTLLEGTPVSFQEGWSTAK KDINTLKFELETVKAKYLELQGELETLQRQFEKATSTSSHKKHGSSAWAAGWKKLSMFGKAAAMDGNESGGEQNHHHHHHQREQQGSRKTPARRWRNSIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	0	1
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	1.7	0.9375
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10036144 [exp]	4.0	0.9263
					Lus10034430 [exp]	4.8	0.8537
AT3G08030			Protein of unknown function, D...		Lus10029501 [exp]	4.9	0.8873
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	5.0	0.8923
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10039222 [exp]	7.9	0.9158
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10004147 [exp]	9.1	0.8291
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10012151 [exp]	9.5	0.8721
AT3G61260			Remorin family protein (.1)		Lus10017811 [exp]	9.6	0.8416
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	10.4	0.8758

Compare expression of checked genes

Lus10011290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.