Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47740 270 / 4e-91 PPPDE putative thiol peptidase family protein (.1.2) AT5G25170 221 / 7e-73 PPPDE putative thiol peptidase family protein (.1) AT2G25190 218 / 2e-71 PPPDE putative thiol peptidase family protein (.1) AT5G47310 213 / 2e-69 PPPDE putative thiol peptidase family protein (.1) AT4G17486 211 / 8e-69 PPPDE putative thiol peptidase family protein (.1.2) AT1G80690 211 / 1e-68 PPPDE putative thiol peptidase family protein (.1) AT4G31980 196 / 2e-58 unknown protein AT4G25680 80 / 7e-18 PPPDE putative thiol peptidase family protein (.1) AT4G25660 77 / 7e-17 PPPDE putative thiol peptidase family protein (.1) AT3G07090 59 / 3e-10 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040485 [exp] 495 / 0 AT1G47740 272 / 6e-92 PPPDE putative thiol peptidase family protein (.1.2) Lus10039492 [exp] 321 / 2e-112 AT1G47740 213 / 2e-69 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 283 / 6e-97 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10032708 [exp] 275 / 1e-93 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10018326 [exp] 222 / 3e-73 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 221 / 5e-73 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10005341 [exp] 221 / 8e-73 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10041021 [exp] 218 / 7e-72 AT5G25170 309 / 5e-108 PPPDE putative thiol peptidase family protein (.1) Lus10040170 [exp] 212 / 2e-69 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113168 [exp] 310 / 3e-107 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 310 / 3e-107 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 304 / 4e-105 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.002G134200 [exp] 289 / 3e-99 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 288 / 1e-98 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G261500 [exp] 236 / 2e-78 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 227 / 6e-75 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 214 / 3e-70 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 212 / 3e-69 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1) Potri.003G080300 [exp] 208 / 1e-67 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10011291 pacid=23149913 polypeptide=Lus10011291 locus=Lus10011291.g ID=Lus10011291.BGIv1.0 annot-version=v1.0 ATGGTCTCAGGAGGATCACAAAAGAGCAATAGGTGGCACTCCATCGATGCATCTCCTCTCAAGGCAAAGCTAGCTAACAAATTCTGCATCTTCCCAAAGT CCAAGAACCTAGCAAGCTACACTCGCGGCGACACGCCTGTTTACCTCAACGTGTATGACCTCACTACGGCGAATGGTTATGTCTACTGGGCTGGCCTTGG AATCTTCCACTCTGCAGTTGAAGTCCATGGTGTGGAGTACGCATTCGGAGCCCATGACTTCTCGACTACCGGTGTCTTCGATGTAGAGCCACGAAACTGT CCCGGCTACTTGTTCAGGAGATCAATATTCATGGGGACTACTACGTTGGATCCTAAGCAGGTCAGGGAATTCATGGAGCGTCAATCTGCTAACTACAATG GTGATACGTATCATTTGATCTACAAGAACTGCAACCATTTTAGCCAGGATATCTGTTTCAAGCTCGCCGGGAAGTCTATCCCTAAGTGGGTCAATCGGCT CGCGAAAATAGGTTCTGTGTGCAACTGTGTTCTACCGGAGACGCTAAGGGATCCGAGCGGAACCCACGAATCGAGTAGCCAAGACGAATGCGAGAGCGAG AAGAAGAGGCTTAGGAGAGGTGGATTCAGCGCTGGGTTTTCATCGATGTCGATATCTCAAGCGGAAGTTTCCATTTCATCATTGTTCAGACATTCTTACT ACAGCAACACCCGCCATGGGAGTTGA
AA sequence Show only first row Show all	>Lus10011291 pacid=23149913 polypeptide=Lus10011291 locus=Lus10011291.g ID=Lus10011291.BGIv1.0 annot-version=v1.0 MVSGGSQKSNRWHSIDASPLKAKLANKFCIFPKSKNLASYTRGDTPVYLNVYDLTTANGYVYWAGLGIFHSAVEVHGVEYAFGAHDFSTTGVFDVEPRNC PGYLFRRSIFMGTTTLDPKQVREFMERQSANYNGDTYHLIYKNCNHFSQDICFKLAGKSIPKWVNRLAKIGSVCNCVLPETLRDPSGTHESSSQDECESE KKRLRRGGFSAGFSSMSISQAEVSISSLFRHSYYSNTRHGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	0	1
AT5G15140			Galactose mutarotase-like supe...		Lus10005251 [exp]	1.0	0.9757
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10002185 [exp]	3.5	0.9645
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	5.3	0.9683
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10039902 [exp]	7.9	0.9535
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10003888 [exp]	8.1	0.9111
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10031470 [exp]	8.5	0.9540
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10018766 [exp]	9.2	0.9552
AT5G47540			Mo25 family protein (.1)		Lus10041405 [exp]	9.3	0.9165
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	9.6	0.9595
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	10.6	0.9539

Compare expression of checked genes

Lus10011291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.