Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76850 1415 / 0 SEC5A exocyst complex component sec5 (.1) AT1G21170 1397 / 0 SEC5B Exocyst complex component SEC5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040488 [exp] 2033 / 0 AT1G76850 1363 / 0.0 exocyst complex component sec5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068900 [exp] 1618 / 0 AT1G21170 1490 / 0.0 Exocyst complex component SEC5 (.1) Potri.005G191500 [exp] 1547 / 0 AT1G21170 1419 / 0.0 Exocyst complex component SEC5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011294 pacid=23149930 polypeptide=Lus10011294 locus=Lus10011294.g ID=Lus10011294.BGIv1.0 annot-version=v1.0 ATGTCTATAGACAGCGACGACGAGGACGAGCTCCTCCAGATGGCGCTCAAGGAGCAATCTCAGCGGGATCTCAATTACCAGCGGCCGTCGGCGGGGTCCT CCTCCTCCAATCAGCGGAAGCCGGTGTCGAATTTCGTCCAGCCTCCCAAATCCGCCGGCTCCAGGGCCGCCGCGGCGCCGGCTCACCGTCACCAGAAGAG CAGGGGAGGCGGCGGCGACAGTACCATGGACGACGACGAGGACTCGGAGGTGGAGATGCTGAGCATATCGAGCGGCGACGAGGAAGTGAGCAAAGATCGG GAAGGCGCCAAAGGGAGAGCTGGTGGTGGTGGAAAGGCGGGGAAGGACGAGGATCGTTGGGATGGCGGGGAGCCTGATTGCTGGAAGCGAGTAGATGAGA CCGAGCTTGCTAGGAGAGTTCGTGAAATGCGAGAGTCAAGAACAGCACCGGTGGCCCAAAAGTTTGAGGCCAAGCCTGCAACTTTTACTACTAGAAAGGG GCTTACTAGTCTATTATCATTCCCTCGTGGAATGGAGTGTATAGATCCATTAGGATTGGGGATTATAGATAATAGAACGTTAAGGTTGATCACAGAGAGA TCAGCTAGTGAGCCAACGAAGTCTGAAAAGGATATAGACAATAATCTACGAGAGAAATTGTTATATTTGTCTGACAAGTTTGATGCAAAGCTGTTCCTGT CAAGAATACACCAAGTTACCAGTGCAGCGGATTTGGAGGCTGGTGCCCTAGCTCTAAAAACTGATCTCAAAGGAAGGACCCAGCAGAGGAAACAGTTGGT GAAGGACAATTTTGATTGTTTTGTCTCTTGCAAAACTACAATTGATGATATTGAATCCAAACTAAGACGGATAGAAGAAGATCCAGAAGGATCTGGGACT TCTCATCTGTATAATAGCATGCAAGGAGTCAGCTCACTCGCTGTTCGTGCATTTGAACCTCTATTTGAAAGACAGGCCCAAGCAGAGAAAATCAGGTCTG TCCAAGGCATGCTTCAGAGGTTCCGAACACTATTCAACCTGCCAAGCACAATTCGGGGAAGCCTTAGCAAGGGTGAATACGATTTGGCTGTTAGAGAGTA TAAGAAGGCGAAATCAGTTGCTCTTCCTTCTCATGTGAGTATATTGAAACGTGTTCTTGAAGAGGTTGAAAAAGTGATGCATGAGTTTAAGGGAACACTA TACAAGTCCATGGAGGATCCGCAAATAGAGTTGACCAATCTCGAGAACACAGTAAGGTTATTGTTGGAGCTAGAACCTGAGTCTGATCCTGTGTGGCATT ATTTAAGTGTACAGAATAACAGAATTCGTGGTTTGCTTGAGAAATGCTCATTGGATCATGAAGCACGGATGGATTTGTTGTATAATGAGATGAAACAAAG AGCTATTTTGGATGCAAAATGGAGGCAAATTCAAAACGAAACTTCAGATGTGGATCCAGTGGATGTGCAATCACTGGTTTTAACTGGTGAAGAAGTTGAT GCTCTTAGGGGAAAGCATATCCGTAGATTAACTGCTGTAATTGTCCATCACATACCAGCCTTCTGGAAAGTAGCACTTTCTGTTTTCAGTGGGAAATTTG CTAAGTCTTCCCAAGTTTCTGTTGAGTCAAAGCTTAGCGCAACATCAAATAAGGCTGAGGAAAGAGTCGTCGATGTGAGATCGACTCATTCTCTTGATGA AGTTGCCGGGATGATACGGAGTACTATCAAGGCATACGGATCAAAGGTTCACACCACATTTCATGACCTTGAGGAAGCAAACATTCTTCGTTCTTATATG AGTGATGCCATAAAGGAAATATCCAAAGCCTGCAAAGCTTTTGAAGTGAAAGAATCGGCTCCACCTACTGCTGCATTGGCACTCAAATCTCTTCAGGCTG ATATCACAAAGATATACATACTCCGACTTTGTACCTGGATGCGGGCAACCACTGCAGAGATGTCAAAAGACGAAACATGGACTCTTGTGTCTATACTGGA AAGGAACAAATCTCCATACACAATATCGTTCCTGCCTCTTGCATTCCGCTCTGTCGTAGCATCAGCAATGGATCAGATCAATCTGTTGATTCAGTCCTTG AAGAGCGAGGCTGGGAAGTCGGAAGATATATTTGCGCAAGTTCAGGAAATTCAATTATCCATCAGACTTGCCTTCTTTAACTGTTTTCTGGACTTTGCAG GTCATCTGGAACATATTGGAACTGAGCTAGTGCAAAATAAATCAAATTTACAGAATGGGTATATTCATGGAGTTGAAGAGAAGTCGTCCAGTCTCCCAGG AACTGTTGTTAATGCACATCAAAAGCTGCTGATTGTGTTGAGTAATATTGGATACTGCAAAGATGAACTTTCACATGAGCTTTTCAAAAAGTACAAGTGT ATATGGCTGCAATCCAGAGAAAGTGATGAAGATGACATCGACATACAAGATTTAGTGAACTCTTTCTCCGGTCTTGAAGAGAAGGTCCTCGAACTTTATA CTTTTGCGAAGGCAAATTTGATAAGAACAGCAGCTATGAACTATTTGCTCAACTCTGGCATTCAATGGGGAGCAGCTCCTCCTGTCAAAGGAGTTCGTGA TGCAGCCGTGGAGTTGTTGCACACTCTGGTCTCGGTGCATGCAGAGGTATTTGCTGGTGCCAAGCCCCTATTAGACAAAACTCTCGGCATTCTTGTCGAA GGTCTGATCGATACTTTTCTCAGCCTTTTCCACGAAAACGAAGAAGGCGATTTCCGGTCGTTAGATGCGAACGGTTTTTGTCAACTGATGCTTGAGCTCG AATACTTCGAGACCATACTGAATCCATACTTCACGCCTCCCGCAAGAGAGTCACTCAAGTCCTTGCAAGGCGTGCTGTTGGAGAAAGCCACCGAGAACGT CTCCGAAGTCGCCGAGAATCCAGGCCACCAACGCCGGCCGACTCGTGGGAGTGAAGATGCAGCTTCTGACGACAGGCAACAAGGAACAGTATCTCCAGAC GACCTAATTGCTCTTGCTCAGCAATACAGCTCAGAGCTGCTACAAGACGAGCTCGAGAGGACTCGAATCAACACAGCATGCTTCATTGAGTCGACTCCCT TGGACACGGTGCCTGAATCCGCCAAAGCCTTCGACTTGCGGGGGGATGCGATGGATTCTCCCCCGCAACACTATGTACAGACCATAAAGCCGGTAGTGCC ACCTCCGCCTGCGTTTCGCCTGAGGTAG
AA sequence Show only first row Show all	>Lus10011294 pacid=23149930 polypeptide=Lus10011294 locus=Lus10011294.g ID=Lus10011294.BGIv1.0 annot-version=v1.0 MSIDSDDEDELLQMALKEQSQRDLNYQRPSAGSSSSNQRKPVSNFVQPPKSAGSRAAAAPAHRHQKSRGGGGDSTMDDDEDSEVEMLSISSGDEEVSKDR EGAKGRAGGGGKAGKDEDRWDGGEPDCWKRVDETELARRVREMRESRTAPVAQKFEAKPATFTTRKGLTSLLSFPRGMECIDPLGLGIIDNRTLRLITER SASEPTKSEKDIDNNLREKLLYLSDKFDAKLFLSRIHQVTSAADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLRRIEEDPEGSGT SHLYNSMQGVSSLAVRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSLSKGEYDLAVREYKKAKSVALPSHVSILKRVLEEVEKVMHEFKGTL YKSMEDPQIELTNLENTVRLLLELEPESDPVWHYLSVQNNRIRGLLEKCSLDHEARMDLLYNEMKQRAILDAKWRQIQNETSDVDPVDVQSLVLTGEEVD ALRGKHIRRLTAVIVHHIPAFWKVALSVFSGKFAKSSQVSVESKLSATSNKAEERVVDVRSTHSLDEVAGMIRSTIKAYGSKVHTTFHDLEEANILRSYM SDAIKEISKACKAFEVKESAPPTAALALKSLQADITKIYILRLCTWMRATTAEMSKDETWTLVSILERNKSPYTISFLPLAFRSVVASAMDQINLLIQSL KSEAGKSEDIFAQVQEIQLSIRLAFFNCFLDFAGHLEHIGTELVQNKSNLQNGYIHGVEEKSSSLPGTVVNAHQKLLIVLSNIGYCKDELSHELFKKYKC IWLQSRESDEDDIDIQDLVNSFSGLEEKVLELYTFAKANLIRTAAMNYLLNSGIQWGAAPPVKGVRDAAVELLHTLVSVHAEVFAGAKPLLDKTLGILVE GLIDTFLSLFHENEEGDFRSLDANGFCQLMLELEYFETILNPYFTPPARESLKSLQGVLLEKATENVSEVAENPGHQRRPTRGSEDAASDDRQQGTVSPD DLIALAQQYSSELLQDELERTRINTACFIESTPLDTVPESAKAFDLRGDAMDSPPQHYVQTIKPVVPPPPAFRLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10011294 [exp]	0	1
AT3G33530			Transducin family protein / WD...		Lus10019403 [exp]	2.4	0.8849
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10017729 [exp]	8.7	0.7999
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001837 [exp]	9.8	0.8429
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Lus10009783 [exp]	13.7	0.8670
AT5G43310			COP1-interacting protein-relat...		Lus10021172 [exp]	14.4	0.8714
AT2G01480			O-fucosyltransferase family pr...		Lus10003715 [exp]	15.0	0.7919
AT5G40740			unknown protein		Lus10032081 [exp]	15.0	0.8512
AT1G50710			unknown protein		Lus10043109 [exp]	15.2	0.8360
AT5G20200			nucleoporin-related (.1)		Lus10043265 [exp]	19.9	0.7900
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10001820 [exp]	20.8	0.7919

Compare expression of checked genes

Lus10011294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.