Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34320 450 / 2e-158 Protein of unknown function (DUF677) (.1) AT4G34330 336 / 8e-114 Protein of unknown function (DUF677) (.1) AT2G18630 328 / 5e-110 Protein of unknown function (DUF677) (.1) AT5G66675 313 / 3e-104 Protein of unknown function (DUF677) (.1) AT5G66670 223 / 4e-69 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT5G66660 199 / 4e-60 Protein of unknown function (DUF677) (.1) AT3G28270 120 / 1e-30 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G28290 102 / 5e-24 AT14A Protein of unknown function (DUF677) (.1) AT3G28300 102 / 5e-24 AT14A Protein of unknown function (DUF677) (.1) AT3G57100 84 / 1e-17 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040489 [exp] 587 / 0 AT4G34320 458 / 9e-162 Protein of unknown function (DUF677) (.1) Lus10040334 [exp] 330 / 7e-111 AT2G18630 429 / 4e-150 Protein of unknown function (DUF677) (.1) Lus10023459 [exp] 321 / 2e-107 AT2G18630 419 / 9e-146 Protein of unknown function (DUF677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G150800 [exp] 482 / 5e-171 AT4G34320 536 / 0.0 Protein of unknown function (DUF677) (.1) Potri.T125304 [exp] 460 / 2e-162 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.009G112430 [exp] 460 / 2e-162 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.007G031200 [exp] 305 / 3e-101 AT2G18630 387 / 3e-133 Protein of unknown function (DUF677) (.1) Potri.005G127401 [exp] 276 / 4e-90 AT2G18630 339 / 2e-114 Protein of unknown function (DUF677) (.1) Potri.005G127200 [exp] 270 / 2e-87 AT2G18630 337 / 8e-114 Protein of unknown function (DUF677) (.1) Potri.005G127300 [exp] 266 / 5e-86 AT2G18630 340 / 4e-115 Protein of unknown function (DUF677) (.1) Potri.002G067300 [exp] 50 / 1e-06 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05055 [flax] [poplar] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Lus10011295 pacid=23149943 polypeptide=Lus10011295 locus=Lus10011295.g ID=Lus10011295.BGIv1.0 annot-version=v1.0 ATGGGGAACCAGACGAGCAGTAGTGCTAGTACTTCTAAGAAGCCGAGCAACTGCAGCAGCAGCCTGACGACGGAGCAGCTGAGCTCCTACGCAGCCGCCT GCCGCGCCGATGAGGACCTCCGCTCGTTCGACACGAATCTTCAGCAGCGGACGAGCCACGTCATCAACACTCTGGCGGTTGGAGTCGAGGTCAGAGCTCT GTCGTTCGATTCGCTCAAGGAGGTTACGGAGTGCTTGCTGGAGATGAACCAGGAAGTCGTGAAGGTCATCCTCGATTGTAAGAAGGATATATGGAAGAGC CAGGATCTGTTCGAGCTTGTCGAAGAGTACTTTGACAATAGTTTGCAGACGCTCGATTTCTGCGCTGCGCTGGAGAAGTCGTTGAAGCGTGCTAGGGATA ATCAGCTCCTGCTGCTCGTCGCGCTGCAGGAGTTCGACGAGGAGATGAAGAAAAGCTCGTCGGAATCGGAACCGGGGAAGAGTACTGCTAGGTCGTACGG AAGGACGGTTGAGGAGTTGAGGAATTTTAAGGAGGCCGGCGATCCATTTACTGATGAGTTCTACAGGACGTTTCAGTCCGTTTACAGGCAGCAGGTGCAA ATGCTGGAGAAGTTACAGAGCAAGAAAGGCAAGCTAGACAAGAAGCTCCGGTCAATACACTCATGGAGGAAGCTATCGAGCATGATCTTCGTAGCGAGCT TCGCCGCCGTACTTATCTGCTCAGTGGTGGCAGCAGCCATGGCGGCGCCGCCAGTCGCCGCCGCACTCGCAGCCGCGACCTCTATCCCGTTGGGGTCAAT GGGGAAGTGGATCGACTCGCTGTGGAAGAACTACGAGACCGCCGTGAAAGGTCAGAAGGAGATTCTGGGGACGATGCAGGTGGGGACTTACGTCGCCATC AAAGATCTGGACACGATCCGGGTCATGGTGGAGCGGCTGGAGGTAGAGATCGGGTCCCTGGAGAAGGCGGCGGAGTTCGCCACCGCCGACGGCGGTGGAG ATGAGGCGACGGTGAGGATTGGTATGGAGGAGATACGGAAGAAGCTAGGTGGGTTCATGAAGAATGTGGAGGAGCTGGGTTTGCAGGCGGAAGTTTGTAG CAGGGATATCCGGCGAGCGAGGACGGTGGTTCTTCAGCGGATCATTAAGCAACCTAACAACTGA
AA sequence Show only first row Show all	>Lus10011295 pacid=23149943 polypeptide=Lus10011295 locus=Lus10011295.g ID=Lus10011295.BGIv1.0 annot-version=v1.0 MGNQTSSSASTSKKPSNCSSSLTTEQLSSYAAACRADEDLRSFDTNLQQRTSHVINTLAVGVEVRALSFDSLKEVTECLLEMNQEVVKVILDCKKDIWKS QDLFELVEEYFDNSLQTLDFCAALEKSLKRARDNQLLLLVALQEFDEEMKKSSSESEPGKSTARSYGRTVEELRNFKEAGDPFTDEFYRTFQSVYRQQVQ MLEKLQSKKGKLDKKLRSIHSWRKLSSMIFVASFAAVLICSVVAAAMAAPPVAAALAAATSIPLGSMGKWIDSLWKNYETAVKGQKEILGTMQVGTYVAI KDLDTIRVMVERLEVEIGSLEKAAEFATADGGGDEATVRIGMEEIRKKLGGFMKNVEELGLQAEVCSRDIRRARTVVLQRIIKQPNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34320			Protein of unknown function (D...		Lus10011295 [exp]	0	1
AT1G06450			Polynucleotidyl transferase, r...		Lus10000327 [exp]	1.4	0.9688
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	2.0	0.9624
AT1G07160			Protein phosphatase 2C family ...		Lus10026381 [exp]	2.2	0.9564
AT1G64700			unknown protein		Lus10008274 [exp]	3.0	0.9660
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	3.2	0.9677
AT1G07160			Protein phosphatase 2C family ...		Lus10042275 [exp]	4.6	0.9552
AT5G38700			unknown protein		Lus10002433 [exp]	6.0	0.9561
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10008126 [exp]	6.9	0.8912
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	6.9	0.9359
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	8.0	0.9550

Compare expression of checked genes

Lus10011295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.