Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18860 1044 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT1G48630 86 / 7e-18 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 86 / 9e-18 RACK1C_AT receptor for activated C kinase 1C (.1) AT4G02730 84 / 3e-17 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 86 / 5e-17 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 85 / 8e-17 TAF5 TBP-associated factor 5 (.1) AT5G08390 85 / 1e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 82 / 1e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 82 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 81 / 1e-15 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040490 [exp] 1448 / 0 AT3G18860 1103 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10014674 [exp] 94 / 2e-20 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 93 / 4e-20 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10040449 [exp] 84 / 4e-16 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10011224 [exp] 82 / 2e-15 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 81 / 2e-15 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023563 [exp] 81 / 3e-15 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10041007 [exp] 79 / 1e-14 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021365 [exp] 76 / 2e-14 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G112184 [exp] 1099 / 0 AT3G18860 1128 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.T125104 [exp] 1097 / 0 AT3G18860 1114 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.004G150700 [exp] 1086 / 0 AT3G18860 1099 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.018G020200 [exp] 88 / 1e-17 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 87 / 3e-17 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.002G051900 [exp] 83 / 6e-17 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 86 / 7e-17 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 85 / 1e-16 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 79 / 1e-15 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G049500 [exp] 79 / 8e-15 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08324 [flax] [poplar] PUL PUL domain CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF09070 [flax] [poplar] PFU PFU (PLAA family ubiquitin binding)
Representative CDS sequence Show only first row Show all	>Lus10011296 pacid=23149893 polypeptide=Lus10011296 locus=Lus10011296.g ID=Lus10011296.BGIv1.0 annot-version=v1.0 ATGGACATGGAAGTCGATTTCAAGCAGTACGAGCTCAGCTGTGAACTTCACGGGCACGAAGATGATGTAAGATCGGTTTCTCCTCCCTGCTCGATTTTGT TGTTCTCGTTTCTTTTCGGTACTGTTCCAATTGATCTCGCTAGTGACGATTCCATTTCATCTCCTGATGTTCTTTGGAGCTCGGCGCTCGCTCTGGTGGT TGACAATTTAGTTGAAAGTCTTCGAGATAGGAAGAATGAAGGAAATCTATGTCCAACTTCGTCGCGAGACAAGACGGTGAGGTTTTGGTCTCCGGATCCA TCAGACAAGCGAAACTATACTTTGTCGAAGATATTCCTGGGACATTCAAGTTTTGTGGGTCCATTAACTTGGATTTCGCCTAGTGAAGAGTTCCCAGAAG GGGGGATTGTATCTGGTGGAATGGATACATTGATATTAGTTTGGAGTGTAAGTACTGGAGAGAAGGTGCAGACTCTGCGGGGACATCAGTTGCAAGTTAC AGGTGTTGTGTTTGATAATGAGGACATCGTCTCAAGTTCAGTTGATTGTACTCTAAGACGGTGGAGGAAGGGCCAAGTTGTTGATTCCTGGGAGGCTCAT AAGTCGGCAGTACAAGCAGTCTTAAAACTTCCATCTGGAGAACTTGTTTCAGGCATGAGTTTTTGTTCTAGTGACACTACCGTTAAACTTTGGAAAGGAA AAACTTGTTTGCACACCTTTGTTGGGCATACAGACACTGTCCGAAGCTTGGCAGTCATGCCTGAACTGGGCCTTCTTTCTGCATCCCATGATGGATCCAT TAGATTATGGGCATTAACGGGGGAAGTATTGCTGGAGATGGTTGGTCACACTTCCATAGTCTATTCAGTTGACTCCCATTGTTCTGGACTTATTGTCAGT GGTAGTGAGGATCGGTCAGCAAAGATATGGAAAGTACTGAATCAATACAGTATTGCAGATGGAAGCTGTGTCCAGACTATAGAACATCCTGGCTGTGTTT GGGATGCCAAGTTTCTGCAGAATGGTGACATTGTAACTGCATGTTCAGATGGGGTTGTACGTATATGGACTTCAAATCAAGACAGAATTGCAGACAAGAC AAATCTAGAACACTACAATTCACAGCTTTCCGAGTACAAGTTAAGCAGGAAAAGAGTCGGAGGTCTAAAACTGGAGGAATTGCCTGGTTTGGACGCTTTA CAAATTCCAGGAAGCACTGATGGCCAGACGAAAGTGATAAGAGAAGGTGACAGTGGGGTTGCGTATTCATGGAATTTGAGAGAAAACCGATGGGACAAGA TTGGCGAAGTTGTAGATGGACCAGATGATGGCGTGGGAAAGCCAAAAACTCTTGATGGCACTGCATATGACTTCGTATTTGATGTTGACATCGGAGATGG CGAGCCTATTCGTAAACTGCCTTACAATCGATCAGATAACCCGTATGATGCTGCTGATAAGTGGCTTCTGAAGGAGAACCTTCCTCTTTCTTACCGTCAA CAAGTTGTGGAGTTTATACTTCAAAATGCTGGACAAACTAGTACTCCTTTGAATCCATCATTTCGTGACCCTTACACTGGCGCGAATGCTTATGTACCTG GAGCAACTTCCAATACATCTGGTGCTCCAGCAAAGCCTAGTTTCAAGCATATCCCTAAGAAAGGAATGCTTGTTTTTGACGTGGCTCAGTACGATGGGAT TATGAAAAAGATGACCGAGTTTAATAATGCCTTACTGTCTGAAGAGAATAAAAAGAAGGTTTCTCTCTCGGAACTGGAGGTGTCAAGACTGGGTGCTATC ATTAAAGTCTTAAAGGACACATCTCATTATCACACTAGTAAATTAGCTGAAGTGGACATTGAGTTGTTGCTGAAATTGCTAAAATCATGGCCTCCTGCTA TGAGTTTCCCAGCCATTGATATTTTACGAATGACTGTCCTACACCCTGATGGTGCTAATTTGCTCCTCAAGCATTTTCAAGACGAAAACGGAATACTTAT GGATACAATTAAGAAAGTTACAGGAGAGAATCCTCTTGTCCCAAACCTGTTGACAACTGTTCGTCTCGTGACTAACCTGTTCAAGAACTCAGAGTATCAC ACCTGGCTGCTGAAGCATCGCAATGAGATTCTCGATGCGTTCTCGAATGTTACATCGTGTCCAAACAAGAATGTGCAGTTGTCTTTTTCAACCATGATAC TCAACTATGCAGTTCTATTAATCGCGAATAAAGATGAAGAAGGCCAATACCAGGTTCTTTCCGCGGCTTTCGAGATAGCAGAACACGACACACTGGATGC TGATACTAAATTCAGAGCTCTGGTAGCGATTGGATCGCTGATGCTTGATGGTCTGCTGAAAGGAGTGGCTTTGGACTTGGGCATCGACAAGGTTGCCAAC GCAGCAAAGTCTTCCAATGACACCAAGCTCTCTGAAATCGGAGCTGATATTGAAACGCTAGCGAAACAGTCTTGA
AA sequence Show only first row Show all	>Lus10011296 pacid=23149893 polypeptide=Lus10011296 locus=Lus10011296.g ID=Lus10011296.BGIv1.0 annot-version=v1.0 MDMEVDFKQYELSCELHGHEDDVRSVSPPCSILLFSFLFGTVPIDLASDDSISSPDVLWSSALALVVDNLVESLRDRKNEGNLCPTSSRDKTVRFWSPDP SDKRNYTLSKIFLGHSSFVGPLTWISPSEEFPEGGIVSGGMDTLILVWSVSTGEKVQTLRGHQLQVTGVVFDNEDIVSSSVDCTLRRWRKGQVVDSWEAH KSAVQAVLKLPSGELVSGMSFCSSDTTVKLWKGKTCLHTFVGHTDTVRSLAVMPELGLLSASHDGSIRLWALTGEVLLEMVGHTSIVYSVDSHCSGLIVS GSEDRSAKIWKVLNQYSIADGSCVQTIEHPGCVWDAKFLQNGDIVTACSDGVVRIWTSNQDRIADKTNLEHYNSQLSEYKLSRKRVGGLKLEELPGLDAL QIPGSTDGQTKVIREGDSGVAYSWNLRENRWDKIGEVVDGPDDGVGKPKTLDGTAYDFVFDVDIGDGEPIRKLPYNRSDNPYDAADKWLLKENLPLSYRQ QVVEFILQNAGQTSTPLNPSFRDPYTGANAYVPGATSNTSGAPAKPSFKHIPKKGMLVFDVAQYDGIMKKMTEFNNALLSEENKKKVSLSELEVSRLGAI IKVLKDTSHYHTSKLAEVDIELLLKLLKSWPPAMSFPAIDILRMTVLHPDGANLLLKHFQDENGILMDTIKKVTGENPLVPNLLTTVRLVTNLFKNSEYH TWLLKHRNEILDAFSNVTSCPNKNVQLSFSTMILNYAVLLIANKDEEGQYQVLSAAFEIAEHDTLDADTKFRALVAIGSLMLDGLLKGVALDLGIDKVAN AAKSSNDTKLSEIGADIETLAKQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18860			transducin family protein / WD...		Lus10011296 [exp]	0	1
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10001145 [exp]	2.4	0.8524
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022581 [exp]	4.0	0.8869
AT3G57890			Tubulin binding cofactor C dom...		Lus10021031 [exp]	6.0	0.8454
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	12.7	0.8583
AT5G49880			mitotic checkpoint family prot...		Lus10024456 [exp]	22.5	0.8230
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	33.7	0.8335
AT5G04700			Ankyrin repeat family protein ...		Lus10019887 [exp]	34.6	0.8223
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10034800 [exp]	37.5	0.8304
AT1G12470			zinc ion binding (.1)		Lus10033725 [exp]	50.8	0.8305
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10005804 [exp]	55.0	0.8252

Compare expression of checked genes

Lus10011296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.