Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08960 590 / 0 phosphotyrosyl phosphatase activator (PTPA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040491 [exp] 776 / 0 AT4G08960 581 / 0.0 phosphotyrosyl phosphatase activator (PTPA) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G162900 [exp] 597 / 0 AT4G08960 549 / 0.0 phosphotyrosyl phosphatase activator (PTPA) family protein (.1) Potri.002G099000 [exp] 571 / 0 AT4G08960 564 / 0.0 phosphotyrosyl phosphatase activator (PTPA) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03095 [flax] [poplar] PTPA Phosphotyrosyl phosphate activator (PTPA) protein
Representative CDS sequence Show only first row Show all	>Lus10011297 pacid=23149907 polypeptide=Lus10011297 locus=Lus10011297.g ID=Lus10011297.BGIv1.0 annot-version=v1.0 ATGGAAGAACCTCAAGGTGGTGGTGGTGGTGGTGGCGCCCAATCGGATATGTCGAAGCTCCATTCATCTCAGTGCACATCCGACACCTGCGTCAAATGCG GCGGCCCCACAGCTTTTCCTCCGCCACCTCAGGGATCCTGGGAAGCGTCCCCTCCACCAGTTTACCGCCCAATTCGTTCTCCGGCGATCAACCTAGCCCC GACGAATCAGTCCCAATCCATCATCCTCTCTCCCGTTCCTCAACGCCAGTCCGTCCCCATAGCTTCTCCTCCTTACGAGTTTCAGCCTCCTTGTAAGAGA ATCCAATCACCCGACGACATTCGGCGCTTCAACGACTCCGATTCGGGGAAAAATTTCATCGGCTTCGTCGTCGCTCTCTCGGAGTCCATCCGCGGCCGCA AGATCTCCGATCCGTGTCACGTCTCGGAAACGGTAAGCTCGATCGTCTCCATCCTCGAAACCCTAGCTCGGTGGATTGAGCAGATCCCACCTGTTCAGCA AGCAGCTCGTTACGGCAACGTGTCTTACCGGACGTGGCAGGGGCGTTTGGCGGAAGCGTGCGATTCTCTGATGCTTCAGTTCTTACCGGAAGAGCTCAAA TCGGCGACGGTGGAGATTGTCCCTTACTTTATGGATAGCTTTGGGAACTCGAGTCGTATTGATTACGGAACCGGCCACGAAACGAATTTCGCCGCCTGGT TGTACTGCTTGGCAAGAATTGGGATCATCAAGGAAGAGGATTATCAAGCCGTTGTAGCTAGGGTATTCGTCAAGTATCTGGATCTGATGAGGAAGCTTCA GGTGGTTTACTGTCTGGAGCCTGCTGGTTCTCATGGCGTCTGGGGGCTCGATGACTACCATTTCCTGCCGTTTATATTTGGTTCTTCCCAGTTGATTGAT CACAGGTACATGAAGCCTAAATCCATTCACAATGACGATATCCTGGATAACTTTGCCCCGGAATACATGTACATCTCTTGCATTGCGTTCATCAAGAAGG TGAAGAAAGGTCCCTTCTACGAGCATTCTCCGATGCTGGATGATATCAGTGGCGTGCCAAACTGGAAGAAGGTGAATGGTGGTATGCTAAAGATGTATAA GGCAGAGGTTCTGGAGAAAGTGCCCATCATGCAGCATTTCCTCTTTGGCTGGCTGATTAAATGGTATGTAATTCTTCATTCTGCTCTATGA
AA sequence Show only first row Show all	>Lus10011297 pacid=23149907 polypeptide=Lus10011297 locus=Lus10011297.g ID=Lus10011297.BGIv1.0 annot-version=v1.0 MEEPQGGGGGGGAQSDMSKLHSSQCTSDTCVKCGGPTAFPPPPQGSWEASPPPVYRPIRSPAINLAPTNQSQSIILSPVPQRQSVPIASPPYEFQPPCKR IQSPDDIRRFNDSDSGKNFIGFVVALSESIRGRKISDPCHVSETVSSIVSILETLARWIEQIPPVQQAARYGNVSYRTWQGRLAEACDSLMLQFLPEELK SATVEIVPYFMDSFGNSSRIDYGTGHETNFAAWLYCLARIGIIKEEDYQAVVARVFVKYLDLMRKLQVVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLID HRYMKPKSIHNDDILDNFAPEYMYISCIAFIKKVKKGPFYEHSPMLDDISGVPNWKKVNGGMLKMYKAEVLEKVPIMQHFLFGWLIKWYVILHSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08960			phosphotyrosyl phosphatase act...		Lus10011297 [exp]	0	1
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	1.7	0.9425
AT4G08960			phosphotyrosyl phosphatase act...		Lus10040491 [exp]	1.7	0.9408
AT3G53390			Transducin/WD40 repeat-like su...		Lus10019930 [exp]	3.7	0.9247
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	5.8	0.9409
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040885 [exp]	6.3	0.9323
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	6.3	0.9222
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10042110 [exp]	6.7	0.9197
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10019323 [exp]	7.1	0.9194
AT3G08670			unknown protein		Lus10021382 [exp]	7.7	0.8852
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10028977 [exp]	9.4	0.9095

Compare expression of checked genes

Lus10011297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.