Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20860 469 / 3e-157 ATNEK5 NIMA-related kinase 5 (.1) AT3G12200 415 / 2e-134 ATNEK7 NIMA-related kinase 7 (.1.2) AT3G44200 420 / 1e-131 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT1G54510 394 / 1e-125 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G63280 390 / 4e-125 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G04810 392 / 5e-125 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 386 / 3e-123 ATNEK3 NIMA-related kinase 3 (.1) AT1G50240 147 / 1e-35 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT3G07980 140 / 1e-33 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT3G53930 139 / 1e-33 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040499 [exp] 1113 / 0 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10031834 [exp] 424 / 2e-139 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1) Lus10042632 [exp] 405 / 4e-130 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10013338 [exp] 415 / 1e-129 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001857 [exp] 413 / 4e-129 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001783 [exp] 400 / 2e-128 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 396 / 6e-127 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10015928 [exp] 372 / 3e-117 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 371 / 5e-117 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G056300 [exp] 637 / 0 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.016G051900 [exp] 635 / 0 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.001G018700 [exp] 477 / 3e-158 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 473 / 6e-157 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.001G218100 [exp] 425 / 2e-133 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G020100 [exp] 424 / 4e-133 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.002G049400 [exp] 407 / 1e-130 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.005G051600 [exp] 400 / 2e-127 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 396 / 2e-126 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.009G082200 [exp] 172 / 2e-48 AT4G33690 127 / 2e-35 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011301 pacid=23149920 polypeptide=Lus10011301 locus=Lus10011301.g ID=Lus10011301.BGIv1.0 annot-version=v1.0 ATGGATTCAGAGGAAGCTGCTGCTAACAAGTCTTCGAAGATGGAAGATTACGAGGTGATTGAGCAGACTGGGAGATGTGGACCTTTTGGTTCTGCTTTCC TTGTCCTCCACAAAGCTGAGAAAAAGAAGTATGTGCTGAAGAAGATCCGGCTGGCTAAGCAAACTGAGAAGTTCAAACGGACAGCTCACGAGGAGATGGA CCTCATTGCTAAGCTAAACCATCCTTACATTGTGGAGTATAAAGATTCTTGGGAGGAAAAGGGGAATTGTGTATGCATAGTGACTGGACATTGTGAAGGA GGAGACATGGCTGCGATTTTGAAAAAGGCTAGAGGAATAATCTTTCCGGAGGAGAAAGTATGCAAGTGGTTCACTCAGTTGTTACTAGCTGTGGATTACT TGCACTCGAACCGGGTCATTCACAGAGATCTGAAGTGCTCCAACATATTCCTTACCAAGGAGAACGACATCCGCCTAGGTGACTTTGGACTGGCAAAGCT ACTCGACACCAAAGAACTCGCTTCTTCTGCGGTTGTCGGAACTCCTAACTACATGTGTCCTGAACTCCTTGCTGGCATACCTTACGGGTACAAATCCGAC ATCTGGTCATTAGGATGCTGCATGTTCCAAATCGCTGCACATCAACCAGCGTTTAAAGCTCCTGATAAGGCTGGACTTATCAACAAAATAAATAGATCAT TCATCTCTCCTCTCCCTATCGTTTACTCGTCTTCACTAAAGCAAATTATCAAAACCATGCTGAGGAAGAACCCAGAACACAGACCAACAGCTGCCGAACT TCTTCGGCACCCTCATCTGCAGCCATATCTGCTTCGCTGTCGTAATGCATCCTCTATTTTCCTTCCAATTATAAGCAACTCTCCCGAGAAATCAAGGCGG AAATCTCTGACGAGAAGACTTAGCAGTGGTGGAGTCAACCGAGGCTCGTTCGAAAATGATCACCCTTCTGAGAGAAGTAGCAACGTGGTACTACAGCGCA TTGATGTCAATGCGACATCTACTTCCGGTGCAATTGATAACCCCGAAACGAAGCCAGCTGATTCCACTTTGGAAACATCCGATACCATTACTGGTCCGAA GGACAGCTCCACCGACTCCGAAACGAGCATTTGCGATTCTAGTGGTGTTCATCGAAAGAATGTCATCGATATTGAGTTTGCCTCGCGTCAATACGATGAG GAGCACAAGCCGGAAGTTGCTGAAAATTTTAACGAACCGAGCGACATAGAAACTGGTCCTGTGACTGAACTAGATGATCATGACTTGGAGGCTACTATTG AGAAGGTTCAGGTAGACAGAAAATATGGCACAGAGGCAACTCCTGAACCTGCACGAATCCTCGAGGAAGACACCAATGAAGCTTCTTCTCCTATAGAGTT ACACCCACAACCTGTCGTTGTACATGCAGAAGAAAGGGGTCTTTTCGATAGTTTTCCGCCCAAAAGTACCGAAATTCCTGTTGCAGGTGATCAGCCTCCT TCAGATGACTGCAAAAGTGGATCGAAACCGGAGAAGGGCATGGGGATCTCGATCGTGGAGAAAGACAATGCTGCTGATGAAGAAGAGCCACTGCCTGCTA ACCACATTTCGCTGCTACGAACGCTGGCAGCGATAAACGAGCAGACGAACAAGCAGCAAGGGGTTCCGACCCAGCAAAGGGCGGACGCGCTGGAGTCGTT GCTCGAGCTATGCGCAAGGCTGCTTAAGCAGGATAAAATCGACGATCTTGCTGGCGTACTGAGGCCATTCGGAGAGGAGACCGTATCGTCTAGGGAAACA GCTATCTGGCTCACAAAGAGCCTTCTCTCTCAACACAAGTACAATGAGAAGACTGAGACAAGGGAAGCTCCAACCAAGGTCCCAATTGCAGGCAATGCTG AGCTGACAGCGCCGCTGACGGCGGTGGGAGCTGAAGCAGGGGCGGCGGAGGGGCCAGCGGAAGGAGCGAGTAATCCGTCGTCAGCAGCCATGACGGCAGA GACGGAGGCTGCGGCGATGACCACGGCGGAAGAGATCTTCTTCATGTTTGTGGGGGCTGCGATGGATCTGGAGACAGAGAACAGAATAGCTGCAATGCTT ATGAGAGAAGCAGCTGAGTTGAGGCGGCGAGCTGAGAAAGAAGGTGTTCGTGCCTATCTTGAGAAACCTACTGCAAGGGTGCGGCCGAACTCGCGATTCC TTACTGCAACTGTTCTTGGAGTGCAGCAAGATGGTTGGAAAATTAACCCCGTTGATGAGCTACCAGCCAACCGAGTTGTGGAAGTTAATGAGATGTGGCG AGTCCGTCAAAAAGAGACTGACTTGGACGAAAGGCTTAGTGGTGGATCCAAAGGTGAGAAGAATAACAGAAACACTAGCGAGTCCCATAAGAGTTCCAGT AAGAGGCTAGCTGTACATTATGATGATGCTAGACCCTCATGCTCGTCAAGTAACAGAGTATCTGGAAGTAGTAGCAGCAACGTGATCGAAGACGATGGAG GATTGAAGGACGAAGAGATTGAAGAGTTTTTGCAGTCCAGGGCAAAGCGTGGTCGAGGTGCAGTTGGTTCGAGGATGGATGAAACAGGTCCATACCGTCC TTCAGGGGAAGACACAATGGATGCTCTTCCCACTAGGACAGTTAAATCTCTCCGTACTGTCTTGGGTCCAGAGAAGCCATCTTCTCTGAAGTATAGCCAG TCTTCAGAAGACGAATCTGATGAGGACAGAAGGAAGAAGGCTAGGAAAACGAAGTCGGAACGAAAGCACAGTACGAAAGAGAAGTTGAGGGATAAGAAAC GGAAGAGGAAAGAAGAGAAGAGAAGGAAGAAACACCGATAG
AA sequence Show only first row Show all	>Lus10011301 pacid=23149920 polypeptide=Lus10011301 locus=Lus10011301.g ID=Lus10011301.BGIv1.0 annot-version=v1.0 MDSEEAAANKSSKMEDYEVIEQTGRCGPFGSAFLVLHKAEKKKYVLKKIRLAKQTEKFKRTAHEEMDLIAKLNHPYIVEYKDSWEEKGNCVCIVTGHCEG GDMAAILKKARGIIFPEEKVCKWFTQLLLAVDYLHSNRVIHRDLKCSNIFLTKENDIRLGDFGLAKLLDTKELASSAVVGTPNYMCPELLAGIPYGYKSD IWSLGCCMFQIAAHQPAFKAPDKAGLINKINRSFISPLPIVYSSSLKQIIKTMLRKNPEHRPTAAELLRHPHLQPYLLRCRNASSIFLPIISNSPEKSRR KSLTRRLSSGGVNRGSFENDHPSERSSNVVLQRIDVNATSTSGAIDNPETKPADSTLETSDTITGPKDSSTDSETSICDSSGVHRKNVIDIEFASRQYDE EHKPEVAENFNEPSDIETGPVTELDDHDLEATIEKVQVDRKYGTEATPEPARILEEDTNEASSPIELHPQPVVVHAEERGLFDSFPPKSTEIPVAGDQPP SDDCKSGSKPEKGMGISIVEKDNAADEEEPLPANHISLLRTLAAINEQTNKQQGVPTQQRADALESLLELCARLLKQDKIDDLAGVLRPFGEETVSSRET AIWLTKSLLSQHKYNEKTETREAPTKVPIAGNAELTAPLTAVGAEAGAAEGPAEGASNPSSAAMTAETEAAAMTTAEEIFFMFVGAAMDLETENRIAAML MREAAELRRRAEKEGVRAYLEKPTARVRPNSRFLTATVLGVQQDGWKINPVDELPANRVVEVNEMWRVRQKETDLDERLSGGSKGEKNNRNTSESHKSSS KRLAVHYDDARPSCSSSNRVSGSSSSNVIEDDGGLKDEEIEEFLQSRAKRGRGAVGSRMDETGPYRPSGEDTMDALPTRTVKSLRTVLGPEKPSSLKYSQ SSEDESDEDRRKKARKTKSERKHSTKEKLRDKKRKRKEEKRRKKHR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10011301 [exp]	0	1
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	1.4	0.9119
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10002950 [exp]	2.0	0.8732
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10012484 [exp]	3.7	0.8477
AT2G46550			unknown protein		Lus10005973 [exp]	4.2	0.8706
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	4.5	0.8680
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032476 [exp]	4.9	0.8484
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10035193 [exp]	5.5	0.8641
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10041820 [exp]	9.2	0.8278
AT3G24120	GARP		Homeodomain-like superfamily p...		Lus10039123 [exp]	10.0	0.7906
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	11.0	0.8471

Compare expression of checked genes

Lus10011301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.