Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06940 876 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G28650 417 / 1e-130 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G28440 416 / 2e-130 HSL1 HAESA-like 1 (.1) AT5G49660 395 / 1e-122 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65700 393 / 1e-121 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G28490 386 / 5e-119 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G09970 383 / 3e-118 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G08590 384 / 7e-118 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 380 / 4e-116 Leucine-rich repeat protein kinase family protein (.1) AT1G75820 375 / 4e-115 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040500 [exp] 1513 / 0 AT5G06940 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10015393 [exp] 428 / 9e-135 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 428 / 1e-134 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10025943 [exp] 410 / 2e-128 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000814 [exp] 409 / 8e-128 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 409 / 1e-127 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 391 / 1e-120 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039872 [exp] 381 / 2e-119 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10038930 [exp] 385 / 2e-118 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051600 [exp] 1106 / 0 AT5G06940 978 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.006G056600 [exp] 1093 / 0 AT5G06940 888 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 432 / 2e-136 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.004G049100 [exp] 423 / 4e-133 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 414 / 1e-129 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.019G021700 [exp] 414 / 2e-129 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 411 / 2e-128 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.017G016600 [exp] 396 / 5e-123 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.007G009200 [exp] 396 / 1e-122 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G111700 [exp] 392 / 4e-121 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011302 pacid=23149908 polypeptide=Lus10011302 locus=Lus10011302.g ID=Lus10011302.BGIv1.0 annot-version=v1.0 ATGGCTGCCAAAACCCAAAGCCACATCCCATTCTTCCTCCTTACCTTCACATTCATTGCTCTCACTTCATCTTCAACCGACACAGAAACCCTTCTAACTT TCAAGAGCTCCATTCAAGATTCAAGCAACTCCTTGTCAAGTTGGTCCAACAACTCAAAGGATCATCACTGTAACTGGACAGGAGTAACCTGTTCATCAAC TCTCTCAGTCACATCTCTAAACCTCCGGAGCTTAAATCTCTCAGGAGAAATCTCTGCCTCCATATGTGAATTAAGAAACTTGAGTGTTCTCAACTTGGCT GACAATCTCTTCAACCAGCCTATCCCACTTCACCTCTCGGCTTGTAGCTCTTTGGACACTCTGAATCTAAGCAACAACCTGATTTGGGGCACGATTCCTG ATCAGATTTCTCAGTTCCAGTCCTTGAAAGTATTGGATTTGAGCAGGAATCATATCGAAGGAAGGATTCCGGATGGTTTGGGAGGGTTGACGAGCTTGCA GGTGCTTAATTTGGGTAGCAACTTGCTTTCTGGTAATGCATATAAGGTGTTCGACAATTTGACTGTACTAACTTTTCTTGACTTGTCTGAGAATCCTTAC TTGGCGAGTGAGATCCCAGCTGGCATTGGGAAGCTCGAGAAGCTTGAACAGATTCTGCTGCAGAACTCCGGATTTTACGGTCAGGTTCCTGATTCATTTG TTGGGTTGAAAAGTTTGGTCATTTTGGATTTGTCACGGAACAATTTAAGTGGAGTGTTTCCTCAGAAGTTTGGTTCTTCTTCTCTGGAGAATCTTGTTTC CTTTGATGTCTCGCAGAATAAGCTTGTGGGTTCGTTTCCAGAAGGTTTGTGTAATAATGCCAAAGGGCTGGTTAGTCTTAGTTTGCATACCAATTTGTTT AGTGGGGTGTTACCAGCTACTTCCATTGATAAATGCTTGAACTTGGAGAGGTTTCAAGTTCAGAACAATGGCTTCTCTGGCGATTTCCCAGATGGGTTAT GGTCATCTAGCAAGATCAAACTGATTAGAGCTGAAAACAACAGGTTCGAAGGGAGGATACCGGACTCGATATCGAATGCTGCTCAGCTCGAGCAAGTTCA GATAGATAACAACATGTTGAGCAGCGAGATTCCTGTCGGGATCGGGTTGGTGAAGACGTTATATAGATTCTCAGCATCTCAGAATCATCTATATGGCAAA TTGCCCTCAAGTTTTTGCGACTCTCCAGTGATGAGCATCATGAACCTCTCCCACAATTCTCTATCTGGCACCATTCCACAGCTCAAGAACTGCAGGAAGC TAGTTTCGTTGTCACTGGCTGAGAACAGTTTCAATGGAGAAATCCCGGATTCCCTTGCTAATCTGGCCGTGCTTACTTATCTCGATCTTTCGCACAACAA TCTCACAGGTTCGATCCCTCAGGGGCTTCAGAACTTGAAGCTTGCTCTCTTTAACGTGTCGTATAACCAGTTATCCGGTCGAGTTCCTTTAGCTCTCATT TCGGGCCTCCCGGCTTCTTTCATGGAAGGAAACCCTGGCCTATGTGGCCCTGGATTGCCTAGCTCATGTCCGGATGAGCTTCCAGTTCGCCACCATCATA ACGGTCCTAGTGCATTGGCATTTGCTCTCATCACGGTTGCATTTGTTGTTGCGGTTTTGCTGGTTGCAGCTGGATTCTTCGCTTTCCATCGATCTAATTC TCGGTGGAAGCTTCAGGCAGGTGGTTGGCATTCTGTGTTCTTCTACCCTCTCAGGGTCACTGAGCACGATTTGATCGTGGCAATGAACGAGAAGAGCGCG AGGGGAAGTTGCGATGGAGGAGCATTCGGTAGAGTGTATGCTATAACTCTACCTAGTGGTGAGCGTGTTGCTGTAAAGAAGCTAGTGAAGATTGGTAGCC AGTCATCAAAGTCACTCAAGGGTGAAGTGAAGACATTGGCCAAGATCAGACATAAGAACATTGTCAAAGTTCTTGGTTTTTGTCATTCTGATGAATCTAT CTTTCTGATCTATGAGTACTTGGAGAAGGGTAGCTTAGGGGATTTGATTCGGGGGGACCCAGGTTTCGAGCTGCAGTGGAGTTCAAGGCTGAGGATTGCT ATTGGTGTTGCTCAAGGATTAGCTTACCTCCACAAGGACTATGTTCCACATTTGCTGCACAGAAATGTCAGGTCCAACAATATTCTTCTGGATGCTGATC TTGAACCAAAGCTCACGGATTTTGGTCTCAATAGAGTCGTAGGAGAGCCCGCATTTCAATCAACTGTTGCTTCGGAATGTACCTCTTCTTGCTACAATCC TCCTGAACATGGATACAGCAAGCAAGCGACTGAGCAAATGGACGTATACAGCTACGGAGTGGTGCTACTAGAACTAGTAACGGGAAGACAAGCCGAGCAG GCAGAACGCTGTGGCGAAGGATCTATCGATATCCTGACATGGGTCCGAAGGAAAATCAACATAGCTAACGGAGCAACCCAAGTTCTGGACCCAAAGATAT CAAGCTCCTCGCAGCAAGAGATGCTGGCAGCTCTAGACATTGCAGTTCGATGCACCTCCGTGATGCCCGAGAAAAGGCCATCTATGTGCGAGGTTGTTCG AGCGTTGCAGTCCCTGAACACGACTACGAGGACGTGCTGCTATGTTCATGAAACAGCGGAATTTTGA
AA sequence Show only first row Show all	>Lus10011302 pacid=23149908 polypeptide=Lus10011302 locus=Lus10011302.g ID=Lus10011302.BGIv1.0 annot-version=v1.0 MAAKTQSHIPFFLLTFTFIALTSSSTDTETLLTFKSSIQDSSNSLSSWSNNSKDHHCNWTGVTCSSTLSVTSLNLRSLNLSGEISASICELRNLSVLNLA DNLFNQPIPLHLSACSSLDTLNLSNNLIWGTIPDQISQFQSLKVLDLSRNHIEGRIPDGLGGLTSLQVLNLGSNLLSGNAYKVFDNLTVLTFLDLSENPY LASEIPAGIGKLEKLEQILLQNSGFYGQVPDSFVGLKSLVILDLSRNNLSGVFPQKFGSSSLENLVSFDVSQNKLVGSFPEGLCNNAKGLVSLSLHTNLF SGVLPATSIDKCLNLERFQVQNNGFSGDFPDGLWSSSKIKLIRAENNRFEGRIPDSISNAAQLEQVQIDNNMLSSEIPVGIGLVKTLYRFSASQNHLYGK LPSSFCDSPVMSIMNLSHNSLSGTIPQLKNCRKLVSLSLAENSFNGEIPDSLANLAVLTYLDLSHNNLTGSIPQGLQNLKLALFNVSYNQLSGRVPLALI SGLPASFMEGNPGLCGPGLPSSCPDELPVRHHHNGPSALAFALITVAFVVAVLLVAAGFFAFHRSNSRWKLQAGGWHSVFFYPLRVTEHDLIVAMNEKSA RGSCDGGAFGRVYAITLPSGERVAVKKLVKIGSQSSKSLKGEVKTLAKIRHKNIVKVLGFCHSDESIFLIYEYLEKGSLGDLIRGDPGFELQWSSRLRIA IGVAQGLAYLHKDYVPHLLHRNVRSNNILLDADLEPKLTDFGLNRVVGEPAFQSTVASECTSSCYNPPEHGYSKQATEQMDVYSYGVVLLELVTGRQAEQ AERCGEGSIDILTWVRRKINIANGATQVLDPKISSSSQQEMLAALDIAVRCTSVMPEKRPSMCEVVRALQSLNTTTRTCCYVHETAEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06940			Leucine-rich repeat receptor-l...		Lus10011302 [exp]	0	1
AT5G06940			Leucine-rich repeat receptor-l...		Lus10040500 [exp]	1.4	0.9345
AT4G17180			O-Glycosyl hydrolases family 1...		Lus10039095 [exp]	3.2	0.9188
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10020273 [exp]	6.5	0.9094
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	8.5	0.9006
AT3G12110		ACT11	actin-11 (.1)		Lus10040826 [exp]	9.5	0.8878
AT3G01810			unknown protein		Lus10037001 [exp]	11.2	0.8600
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10025610 [exp]	11.8	0.8949
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10030962 [exp]	11.8	0.8450
AT1G20950			Phosphofructokinase family pro...		Lus10025167 [exp]	12.0	0.8665
AT2G40070			unknown protein		Lus10037838 [exp]	16.5	0.8391

Compare expression of checked genes

Lus10011302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.