Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42320 599 / 0 nucleolar protein gar2-related (.1.2) AT3G57780 549 / 0 unknown protein AT5G06930 450 / 3e-148 unknown protein AT3G01810 425 / 2e-136 unknown protein AT5G43230 400 / 2e-127 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040502 [exp] 1299 / 0 AT2G42320 685 / 0.0 nucleolar protein gar2-related (.1.2) Lus10041590 [exp] 439 / 5e-141 AT3G01810 603 / 0.0 unknown protein Lus10037001 [exp] 440 / 2e-140 AT3G01810 583 / 0.0 unknown protein Lus10022341 [exp] 428 / 1e-136 AT3G01810 605 / 0.0 unknown protein Lus10015804 [exp] 287 / 1e-90 AT5G43230 371 / 2e-122 unknown protein Lus10015805 [exp] 91 / 1e-18 AT3G01810 160 / 5e-41 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G056800 [exp] 822 / 0 AT2G42320 618 / 0.0 nucleolar protein gar2-related (.1.2) Potri.016G051500 [exp] 802 / 0 AT2G42320 645 / 0.0 nucleolar protein gar2-related (.1.2) Potri.010G057700 [exp] 451 / 2e-147 AT5G43230 560 / 0.0 unknown protein Potri.001G333200 [exp] 449 / 2e-144 AT3G01810 652 / 0.0 unknown protein Potri.008G177500 [exp] 449 / 6e-144 AT5G43230 565 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011304 pacid=23149914 polypeptide=Lus10011304 locus=Lus10011304.g ID=Lus10011304.BGIv1.0 annot-version=v1.0 ATGAAACAGCCAGACAAGAGGAGAACACCAAACACTACCGAGTCGAAACGTGGTGCGAGAACTGAAAGCAAAGGCCGCAGCAGGCAAGTTGGAGCCAGAG ATTTACATGTGAAGCCAGACTCCAATGTTGTAGTAGTAAGTGATTCGAATGCGCGATCGGACCCCTCGGAGGTTTATGAAAATGTTGTTATACACTATGT GGATGATGTCAACAGGTCTGATCAGGTAGCACCACCAAACAGTGCAAAAGCCAAGGGGAACATGGGTTTAGGTGATAGTGATGTCGAGAGAGAACAAAAG GTCGTCCTTGGTAAGGAAGAAGAATCGGATTATGTTTCGTCCCACGGTGGGGATTCGGTCATAGGCGATGATGAGAGAGTAGAACAAGTTGCTAGAGTTC CTAGGAAATCTTCAAAAGAGACCGGTTCTCGTGGTGGGTCTAGAGTAAGGGATAGGGAAGCTGGTAAACCAGTGTCTAAAGCAATGAGCAACAACAACAC CAAGAAACCTGCGATCATCTCGAGTAATGGAGCATCCAAGGTTTCTACCAAGATTGCTAAGGAGGTTAGAGATCTCCCAGTTGAAACTTGTGAAGGGGAT GAAGATATGGTCGTTGATGACGGTAAAGAGGTTGAGGTGTTCGAGGAGGCCTCAAACGCTACTACACAAAGTGTTGCGAGCGACAGCGAAACGATTGATG TCGAGGAAACCGGTGATGCCAGCACAGTCGTAAACCAAAGGATCGAACAAATGGAGATAAAAATCGAGAAACTTGAAGCGGAACTGAGAGAAGTTGCTGC CCTTGAGATCTCGCTATATTCTGTTGTACCAGAACATGGTAGCTCGGCACATAAGGTGCACACACCTGCTCGCCGTCTTTCGAGACTCTATATCCATGCA GGCAAGCATTGGACTCTGGATAGGCGAGCCACCATCGCTAAGAACACCGTGTCAGGGCTGGTACTGATATCTAAATCATGCGGAACTGATGTTCCAAGGT TATCGTTCTGGCTGTCTAACACAATCGTGCTGAGGGAGATCATTTCCCAGGCGTTTGGTAGTTCTTGTAACTCTAGTATATCAAGGTTGATGAAGAGGAA TGGTAGTAATGGATATTCACAGTTTGCTGAGGACTGGCAGGAGAGTGGAACCTTCACTGCTGCCCTGGAGAAAGTCGAATCGTGGATTTTCTCACGAATC GTTGAGTCAGTCTGGTGGCAGGCCTTGACTCCACATATGCAACCCCCAAAGAAGGACTTGTCGGCGAATAAAAGTAGTTCGAGGCTACTTGGACCGGCAC TCGGAGATCAGCAGCAAGGCAACTTCGCCATCAACCTATGGAAAAATGCTTTCCAAGATGCGTTTCGACGAATCTGTCCAGTTAGAGCTGGAGGGCATGA GTGCGGCTGTTTGCCTGTTGTAGCTAAAATGGTTATGGAGCAGTGTGTTGACAGACTGGATGTAGCAATGTTCAATGCAATTCTACGAGAATCGGCAAAT GAGATCCCAACTGATCCTGTATCAGACCCGATTGTAGATTCCAGGGTTCTTCCTATACCAGCGGGAGACTTGAGCTTTGGCTCTGGCGCTCAACTAAAGA ATTCTGTTGGGAACTGGTCCAGATGGCTTTCGGATGCAGTGGGCATCGATGATGAGGAGATCAGTGAGATCGATGATAATAATGATAAACAATGCACGAA ACCCAAGTGCTTCAATCTCCTTAACGACTTGAGTGATCTTCTTATGCTTCCAAAAGACTTTCTAGCTGACAGATCAGTGAGGAAAGAGGTTTGCCCGTCA ATTGGTCTTCCATTGGTGAAGCGGATACTCTGCAATTTTACTCCCGACGAGTTCTGTCCTGATGCTGTCCCTGGTGCTGTACTGGAGGCCTTGAATGCTG ATAGCATTGTGGAGCGCAAGCTATCAGGCGAATCCACACGGAGCTTCCCTTACTCGGCTGCATCAGTCTTCTACATGCCACCTTCTTGCGAAGCAGTGTC GGAGAAAGTTGCAGAGGCTGGCGCCAAATCTCAGCTATCAAGAAATGCCTCGGTTGTACAGAGGAAAGGATACACTAGCGATGAGGAGCTGGAAGAGCTG GATTCTCCTCTCGTTTCCTTACTTGAGAAGTCGCGACCATCTGTAACAAATGGGAACGGGAAGCACAGCGAGCCCAAGGTTACTTTGAATGCAAGGTACC AACTTCTTCGAGAGGTCTGGTCTGGCTGA
AA sequence Show only first row Show all	>Lus10011304 pacid=23149914 polypeptide=Lus10011304 locus=Lus10011304.g ID=Lus10011304.BGIv1.0 annot-version=v1.0 MKQPDKRRTPNTTESKRGARTESKGRSRQVGARDLHVKPDSNVVVVSDSNARSDPSEVYENVVIHYVDDVNRSDQVAPPNSAKAKGNMGLGDSDVEREQK VVLGKEEESDYVSSHGGDSVIGDDERVEQVARVPRKSSKETGSRGGSRVRDREAGKPVSKAMSNNNTKKPAIISSNGASKVSTKIAKEVRDLPVETCEGD EDMVVDDGKEVEVFEEASNATTQSVASDSETIDVEETGDASTVVNQRIEQMEIKIEKLEAELREVAALEISLYSVVPEHGSSAHKVHTPARRLSRLYIHA GKHWTLDRRATIAKNTVSGLVLISKSCGTDVPRLSFWLSNTIVLREIISQAFGSSCNSSISRLMKRNGSNGYSQFAEDWQESGTFTAALEKVESWIFSRI VESVWWQALTPHMQPPKKDLSANKSSSRLLGPALGDQQQGNFAINLWKNAFQDAFRRICPVRAGGHECGCLPVVAKMVMEQCVDRLDVAMFNAILRESAN EIPTDPVSDPIVDSRVLPIPAGDLSFGSGAQLKNSVGNWSRWLSDAVGIDDEEISEIDDNNDKQCTKPKCFNLLNDLSDLLMLPKDFLADRSVRKEVCPS IGLPLVKRILCNFTPDEFCPDAVPGAVLEALNADSIVERKLSGESTRSFPYSAASVFYMPPSCEAVSEKVAEAGAKSQLSRNASVVQRKGYTSDEELEEL DSPLVSLLEKSRPSVTNGNGKHSEPKVTLNARYQLLREVWSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42320			nucleolar protein gar2-related...		Lus10011304 [exp]	0	1
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10005042 [exp]	1.0	0.9409
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	2.8	0.9174
AT3G24715			Protein kinase superfamily pro...		Lus10025941 [exp]	3.5	0.9040
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10008646 [exp]	4.6	0.8930
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	4.6	0.9062
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	5.5	0.8979
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10035580 [exp]	6.0	0.8931
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	8.5	0.8860
AT4G37820			unknown protein		Lus10019253 [exp]	9.5	0.8657
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	10.5	0.8753

Compare expression of checked genes

Lus10011304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.