Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57785 151 / 7e-49 unknown protein AT2G42310 150 / 1e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042351 [exp] 165 / 4e-54 AT2G42310 169 / 6e-56 unknown protein Lus10026317 [exp] 162 / 2e-51 AT2G42310 173 / 1e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051400 [exp] 140 / 2e-44 AT2G42310 169 / 5e-56 unknown protein Potri.006G056900 [exp] 140 / 2e-44 AT3G57785 156 / 6e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011305 pacid=23149889 polypeptide=Lus10011305 locus=Lus10011305.g ID=Lus10011305.BGIv1.0 annot-version=v1.0 ATGCCTCCGATGCAACTGTTCACATCGGCTTCTAGCACAATCCGCCGCAGCCTGTCCGGATCCCTCCGGACGCGCAGCGGCGGCTCTGGACCCAACCCTT TCACGACGGCGGGACATGAGGAGCGGCCGAAAGGATACCTCTTCAGCAGGACGCCGCCGCCTCCGGGGCAGTCGCGGAAGTGGGAGGACTGGGAGCTGCC TTGCTACATCACCAGCTTCCTCACAATCGTCATCCTCGGCGTCGGGCTCAACTCCAAGCCCGATCTGACAATTGAGACCTGGGCTCACCAGAAGGCCCTC GAGCGCTTGGAGATGGAGAAATTGGCCACCGATTCCGATTGA
AA sequence Show only first row Show all	>Lus10011305 pacid=23149889 polypeptide=Lus10011305 locus=Lus10011305.g ID=Lus10011305.BGIv1.0 annot-version=v1.0 MPPMQLFTSASSTIRRSLSGSLRTRSGGSGPNPFTTAGHEERPKGYLFSRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLNSKPDLTIETWAHQKAL ERLEMEKLATDSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42310			unknown protein		Lus10011305 [exp]	0	1
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10034506 [exp]	23.3	0.6945
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10037033 [exp]	31.2	0.7192
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10001986 [exp]	39.6	0.6728
AT1G42960			unknown protein		Lus10016034 [exp]	44.2	0.6790
AT3G10290			Nucleotide-sugar transporter f...		Lus10018043 [exp]	44.9	0.7162
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10025738 [exp]	47.5	0.6639
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10042201 [exp]	53.2	0.7100
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10033164 [exp]	57.4	0.6949
AT3G13410			unknown protein		Lus10009853 [exp]	73.3	0.6552
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10010618 [exp]	88.2	0.6707

Compare expression of checked genes

Lus10011305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.