Plant FIBer expression Database

Lus10011306 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31270 110 / 1e-25 ATCDT1A, CDT1A, CDT1 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1)
AT3G54710 100 / 1e-22 ATCDT1B, CDT1B, CDT1 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040505
[exp]
737 / 0 AT3G54710 171 / 5e-47 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1)
Lus10000708
[exp]
151 / 9e-39 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10024879
[exp]
137 / 3e-35 AT2G31270 292 / 7e-93 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G222700
[exp]
189 / 4e-53 AT2G31270 357 / 3e-116 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1)
Potri.002G040100
[exp]
173 / 1e-47 AT2G31270 339 / 1e-109 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1)
Potri.004G067700
[exp]
75 / 5e-14 AT2G31270 115 / 8e-27 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF08839 CDT1 DNA replication factor CDT1 like
Representative CDS sequence
>Lus10011306 pacid=23149906 polypeptide=Lus10011306 locus=Lus10011306.g ID=Lus10011306.BGIv1.0 annot-version=v1.0
ATGCACTCCCTCTGCGCTGCTCCACAGCCACTGCTGCCTGCAACTCCGAAATCTCATCCGCCAGAAGCCACATCACTTCCGTCCATGGCTGCGGACAGCA
AAAACTCCGATGATTTCAAAGGATTGGCTCAGATCTCCAGTAGGCGAGATGATCTGCTCGAGACGTTCGCAAGCTTAGTAACCGCGATCCGGATGCTTGG
CCTGAAGAGATCTGCTTCTACTTTCCCCAACATAGCTCGCAAGGTCGAGTCCCTGACCAAGAGGGAGTTCTCTCTTCGAAATCTGGCTCTGTTGAAGATC
ATCTTCCCCGAGGCAATCGATGTGACCGAACTGGATCATCTTCGTATCGATCTGAATGTCGATTCTGTTTCGAAATCAGAGAACGGAAGCAGCCCTTACA
TGGTGCTGAGAGAAGAGTTCAGGATTCGGCTGGCAGATTTTTTCAAACATCACCCCGAGGCAATGCTGCTCAGACCAGTCGATTTTGTTGTGATCGTGGC
TTTGTCTCACATTCTTTGGGGGAGATTTCAGGATGATGAAGTTCCTGAAGCAATGCTGCTCGAACCGGTCCAGCTCCCAAAGCAAGATCGAGAAGCGGAT
TCATTATTGGAATCTGATGCGCTGCTCGACAAATTGAAGCCCGTTGCCGCGTCTCATTTCGGGCCTCGTTTCTACAGGGGACTATCCAGGAGGGTTGTGA
AAGTAAATGATGATTCGATAGAGCCATGCCTCGATTTGGAATCAGGGCTCGAAGAAGCTGATTGTTCTTCAGTTAGTGTGCCTTTCTTGCCTGTAACTCC
AGGCAAGGAAAAAGGAGGTGGCTTTGACCTGATCCAGGCTACTCCAGTGAAAACAGTTGAGTGTGCAACTCCTTCTAAGCTTATAGTAGACGATTCTTTC
TCGAAGGAGGATGAATGCCAGGCAACTCCAGCGAAAGGAGTCGATTTGTCAACTCCAGCGAAAGGAGTCGATTTGTCAACTCCATCAAAGTCTATTTACA
CAGCAACACCCGCTTTACGTACACCAAAGGTGCAGAATCTGATGAGCCCTAACGACGAGGACAGTGATGCTGTAGAGTTGGCAAACAAGCTGAAAAGGAG
GCACCATGTAAGGACCAGGTCACTGAAGTTCGATGCTCCGGTGATCGATGACGTGACTACTGGCAAGAATGTTGACCTTGTTGTAACTTCGATCAAGGAG
AATGAGAGAAAGGGGCAACCACAGATGGCAATGGCAGCAAGCTTACCGAAGCTGTTCAACACGATCGAGTCGATTTTCCGGTCAGGAAGATCAGTCATGA
CAAAGGAAGAGGTCATCCACAAGATAATTGCAGCTCATTTAGAAGTCGTCAACAGAGCCGAGGTGGAAGAGCAGCTCAAGATGTTAGGAGAAGTAATCCC
AGAATGGATCTCTGAAAGAACAGCCTTTAGTGGCGATTCGCTCTACTGCATCAACAAGTTGTCGAGCTCGGCAGCCATGAGAGCACGTCTGGAAGAAGCA
CTTCCAGCAAAAGAAGAAGCTAGCTTGGGGCTGGGATAA
AA sequence
>Lus10011306 pacid=23149906 polypeptide=Lus10011306 locus=Lus10011306.g ID=Lus10011306.BGIv1.0 annot-version=v1.0
MHSLCAAPQPLLPATPKSHPPEATSLPSMAADSKNSDDFKGLAQISSRRDDLLETFASLVTAIRMLGLKRSASTFPNIARKVESLTKREFSLRNLALLKI
IFPEAIDVTELDHLRIDLNVDSVSKSENGSSPYMVLREEFRIRLADFFKHHPEAMLLRPVDFVVIVALSHILWGRFQDDEVPEAMLLEPVQLPKQDREAD
SLLESDALLDKLKPVAASHFGPRFYRGLSRRVVKVNDDSIEPCLDLESGLEEADCSSVSVPFLPVTPGKEKGGGFDLIQATPVKTVECATPSKLIVDDSF
SKEDECQATPAKGVDLSTPAKGVDLSTPSKSIYTATPALRTPKVQNLMSPNDEDSDAVELANKLKRRHHVRTRSLKFDAPVIDDVTTGKNVDLVVTSIKE
NERKGQPQMAMAASLPKLFNTIESIFRSGRSVMTKEEVIHKIIAAHLEVVNRAEVEEQLKMLGEVIPEWISERTAFSGDSLYCINKLSSSAAMRARLEEA
LPAKEEASLGLG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G54710 ATCDT1B, CDT1B,... ARABIDOPSIS HOMOLOG OF YEAST C... Lus10011306
[exp]
0 1
AT1G50240 FU FUSED, Protein kinase family p... Lus10039168
[exp]
6.6 0.9354
AT2G24490 ATRPA32A, RPA2,... SUPPRESSOR OF ROS1, replicon p... Lus10020154
[exp]
8.1 0.9331
Lus10037590
[exp]
8.2 0.9374
AT1G44900 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, ... Lus10009683
[exp]
9.0 0.9356
AT2G07690 MCM5 MINICHROMOSOME MAINTENANCE 5, ... Lus10019592
[exp]
9.6 0.9363
AT5G46740 UBP21 ubiquitin-specific protease 21... Lus10043126
[exp]
14.5 0.9314
AT5G36740 Acyl-CoA N-acyltransferase wit... Lus10042602
[exp]
16.2 0.9182
AT1G72250 Di-glucose binding protein wit... Lus10005582
[exp]
17.2 0.9346
AT2G34190 Xanthine/uracil permease famil... Lus10029238
[exp]
19.8 0.8997
AT1G16630 unknown protein Lus10006845
[exp]
20.6 0.9294

Lus10011306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.