Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23700 155 / 1e-42 Protein of unknown function, DUF547 (.1) AT5G66600 143 / 2e-38 Protein of unknown function, DUF547 (.1.2.3.4) AT3G18900 111 / 3e-27 unknown protein AT1G21060 108 / 4e-26 Protein of unknown function, DUF547 (.1.2) AT1G43020 101 / 7e-24 Protein of unknown function, DUF547 (.1.2.3.4) AT5G47380 100 / 2e-23 Protein of unknown function, DUF547 (.1) AT1G76620 97 / 4e-22 Protein of unknown function, DUF547 (.1) AT3G13000 84 / 1e-17 Protein of unknown function, DUF547 (.1.2) AT2G39690 81 / 7e-17 Protein of unknown function, DUF547 (.1.2) AT1G16750 76 / 3e-15 Protein of unknown function, DUF547 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040507 [exp] 388 / 1e-134 AT2G23700 222 / 1e-65 Protein of unknown function, DUF547 (.1) Lus10022480 [exp] 156 / 8e-43 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10016786 [exp] 155 / 2e-42 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10007795 [exp] 103 / 4e-24 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10016114 [exp] 83 / 3e-18 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1) Lus10033328 [exp] 82 / 6e-17 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 81 / 8e-17 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10037293 [exp] 81 / 9e-17 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10021450 [exp] 81 / 2e-16 AT5G60720 541 / 0.0 Protein of unknown function, DUF547 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G111100 [exp] 178 / 4e-51 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 171 / 2e-48 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 150 / 6e-41 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G033100 [exp] 146 / 1e-39 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 115 / 1e-28 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.001G157200 [exp] 100 / 3e-23 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.006G216800 [exp] 88 / 3e-19 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.009G009500 [exp] 81 / 1e-16 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.007G003900 [exp] 77 / 2e-15 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.014G034800 [exp] 75 / 8e-15 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10011308 pacid=23149897 polypeptide=Lus10011308 locus=Lus10011308.g ID=Lus10011308.BGIv1.0 annot-version=v1.0 ATGGAGCTTCAGCAGCAACTGGAGAACCAGATCTTGCTAAGGCAAGCACTGGAGAAGGAGCTGATCAGGGAAATCTCAGTTCTTGAGCTCCAAGTTGTGA ACTTGGAGACTTGTCTTCTGTCTCTACACAGGCAGAGATGTTCATACAACAAAACAGAGTCCCCTGCATCACTTGAAGAGGGCGGGATGATCGTGTCGAG AGACGAGGAGGATTCTCGTTCGTTTCGGCAGCCGAAGAAGTACAATGTGGTTGAGAGATGCTACTCATCACTTTCGTCTCATCATTCTACTGCTACTTCT GCTGCTGCTGCTGTCTCTAGAGCCATTGGTTCATGTCACTATTCACTTCCTCTGTCCATGCTAGAGGCTTTCTTGGTGTATGGCATCCCAAGGAACCATG CTAGGAGAATGTCTTTAGCACTGAAGGCTTCATGTAACGTGGGTGGGCGAACTCTTAGTGTAGAGATGATCCAGAGTTCGATTCTCCGATGTCACTTGCC TCGCCCGCGACAGCAATGGTTAGGAGGTCTGTTTCATCCATGGAGAAAGCAGAAGACTAACAACGCAGATTCGAGAAATCCCTACTCCATCGACACCCAG GAACCTCGTCTTTACTTCGCGCTCTGCACGGGAAACCATTCCGATCCCCCGCTCCGAGTATACGCTCCGGAAACTGTGTTCTCGGATCTCGAAGCAGCGA AGCAAGAGTACATCCAGACATCACTGGTACCAAACAACAAAGAAAAGAAGCAGAGATCATCAAATGTACTAGTATTGTATCTTCCGAAGATCGTTGAGCT TTTCGCAAAGGATTCGAAGCTCGGTGACCAGTCTGCTCTAATGGAGACCGAAATACTCGGCCATCTTGACGATCTTCTTCCTGTGAGATCGATGATCATT CGTTGGCTTCCTCATAGCTTTGAATTTCGATATTTGATCGCTAGGGATTTTTCATAA
AA sequence Show only first row Show all	>Lus10011308 pacid=23149897 polypeptide=Lus10011308 locus=Lus10011308.g ID=Lus10011308.BGIv1.0 annot-version=v1.0 MELQQQLENQILLRQALEKELIREISVLELQVVNLETCLLSLHRQRCSYNKTESPASLEEGGMIVSRDEEDSRSFRQPKKYNVVERCYSSLSSHHSTATS AAAAVSRAIGSCHYSLPLSMLEAFLVYGIPRNHARRMSLALKASCNVGGRTLSVEMIQSSILRCHLPRPRQQWLGGLFHPWRKQKTNNADSRNPYSIDTQ EPRLYFALCTGNHSDPPLRVYAPETVFSDLEAAKQEYIQTSLVPNNKEKKQRSSNVLVLYLPKIVELFAKDSKLGDQSALMETEILGHLDDLLPVRSMII RWLPHSFEFRYLIARDFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23700			Protein of unknown function, D...		Lus10011308 [exp]	0	1
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10036182 [exp]	3.5	0.8626
AT4G03415			Protein phosphatase 2C family ...		Lus10039802 [exp]	3.9	0.8602
AT2G23700			Protein of unknown function, D...		Lus10040507 [exp]	5.9	0.8432
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	6.2	0.8617
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	7.0	0.8387
					Lus10018660 [exp]	8.1	0.8429
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	13.0	0.8442
AT1G71110			unknown protein		Lus10035272 [exp]	16.3	0.8136
AT2G18196			Heavy metal transport/detoxifi...		Lus10033250 [exp]	17.7	0.8384
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	18.8	0.8177

Compare expression of checked genes

Lus10011308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.