Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34370 730 / 0 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT2G16090 726 / 0 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) AT3G27710 593 / 0 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT3G27720 436 / 1e-147 ATARI4, ARI4, ATARI14 ARABIDOPSIS ARIADNE 4, ARIADNE 4, IBR domain containing protein (.1) AT2G31510 219 / 2e-63 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT1G05890 214 / 9e-62 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31770 209 / 4e-60 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT2G31760 201 / 3e-57 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT1G65430 197 / 1e-55 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) AT2G31780 192 / 9e-55 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040508 [exp] 1055 / 0 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10042348 [exp] 864 / 0 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10026319 [exp] 822 / 0 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) Lus10026856 [exp] 207 / 6e-59 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10027027 [exp] 196 / 4e-55 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10013371 [exp] 194 / 2e-54 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10025566 [exp] 191 / 5e-53 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10020229 [exp] 179 / 3e-48 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10000908 [exp] 63 / 4e-10 AT1G32340 662 / 0.0 NDR1/HIN1-like 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124304 [exp] 777 / 0 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 777 / 0 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.007G126900 [exp] 216 / 4e-62 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.017G032000 [exp] 215 / 6e-62 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.008G077100 [exp] 214 / 2e-61 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.010G180600 [exp] 209 / 2e-59 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131200 [exp] 199 / 2e-56 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131300 [exp] 199 / 6e-56 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.005G071500 [exp] 63 / 6e-10 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.003G187700 [exp] 56 / 2e-08 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10011309 pacid=23149903 polypeptide=Lus10011309 locus=Lus10011309.g ID=Lus10011309.BGIv1.0 annot-version=v1.0 ATGGAGGATTACGGAGATAGCTACGACGAGTGCTACATGTCCGATGAGGATCCGGATGAGCCAGTGGTAGTATATGAGAACGAAGATTCCGATGCCACCG GCAAGCTTTCCACGGCGACGAAGACTGTTACTGCTGAGTTAATTGCTGAATCATACTGTTTCAATTTTCTCCAGGTGATCACAAGAAATTCTCTACTTGC TGCACAGACGGAGGACTTAAGGAGAGTGATGGAGCTGCTCTCTATTAGAGAACAGCATGCGAGGACTCTACTGATCCACTACCGTTGGGATGTCGACAAG ATTTTCTCTCTGCTGGTAGAAAAGGGGAAAACGTGCTTGTATATGGGAGCCGGTATTATGGTGGATGACCATTCGGATTACAGCATCCGTCCATGTTCAT CTTCTACTGTGACTTGTGAAATCTGTATGGAGGATGTGCCTGCTAATATGTCAACAAGTATGGACTGTGGCCATTGCTTCTGTAATGATTGTTGGACCGA ACATTTCATTGTACAAATAAATGAAGGTCAGAGCAGGCGTATCAGGTGCATGGCGCACAAATGCAATGCTATATGTGATGAAGCTGTTGTCAGAAATTTG GTTAAGGAAAGGCATCCTGACTTGGCAGAGAACTTCGAGCGTTTTCTTTTGGAGTCATATATAGAGGATAATAAAACGGTGAAATGGTGTCCCAGCGTTC CACATTGTGGGAATGCTATGAGAGTTGAGGGAGATCCCGTTTGCGAGGTGCAATGTTCCTGTGGAATGCAGTTTTGTTTCAATTGCTTAGCAGAAGCACA CTCGCCTTGTTCGTGCACGATGTGGAAACTTTGGACTAAGAAGTGCAACGATGAATCAGAAAATGTTATTTGGATTACAGTTCATACTAAGCCTTGTCCA ACGTGTCAAAAACCAGTTGAGAAGGATGGTGGCTGCAACTTGGTGTACTGTGTCTGTAAACAAGCATTTTGCTGGCTGTGTGGTGGAGCTACAGGGACAG CCCATACATGGGATACAATAGCTGGTCACAGTTGTGGTCGTTTTAAAGAGGACGTGGAGATAAAGAAGGCACGGGCTGAAAGGGATCTCTATCGATATAT GCACTATTACAACCGATACAAAGCTCATGTAGACTCAATTAAGCTTGAAAATAAACTCGAGGAGACTATCAATGAAAGGGTGTCAGTTAGTGAAGCCAAG GAGTGGGAATTACGGGATTTCAGCTGGGTAACCAGGAGTCTAAACAAACTTTTCAGATCAAGACGGGTGCTATCTTATTCTTACGCTTTTGCATTTTACA TGTTCGGATTAGAACTGTTTGAGGGCGAGATGACAGCGGAGGACAGAGAAATAAAACAGAATCTATTTGAAGATCAGCAGCAACAACTTGAGGCAAATGT TGAGAGACTCTCCAAGTATCTGGAAGAGCCCTTTGATGTGTACGATGTTGATAAACTAATGGAGACAAGGTTTCAGGTCATCAATCTAACTGTTCTAACA GATACCCGCTGCAAAAGCATGTATGGTTGCATTGAGAATTTTTTATTGGGTTCATTGAGTTCTCTTCAACTTGCAATTCATGCTATAGCCCCTTACAATT CCAACGGCATTGAGGAGGCCTCGGAACTACCTACCGAACTATCAATCGGTAATTTGGGTTCCAATGTTACACGTTTAACATTTCAGCAGGCTTGGAGATT TATTTACTCGGGTGAGACGACGAAACGGGAAAAGCCATCAGGTTCCGGGACCTTGAATGCGAAGGAATGCTCGGTGCGGAAGAGGGTGCGGAAGGAGGTC AGCGGATTCTTTGATCTGAATATGCCTGCAGAGGTCATAGACTAG
AA sequence Show only first row Show all	>Lus10011309 pacid=23149903 polypeptide=Lus10011309 locus=Lus10011309.g ID=Lus10011309.BGIv1.0 annot-version=v1.0 MEDYGDSYDECYMSDEDPDEPVVVYENEDSDATGKLSTATKTVTAELIAESYCFNFLQVITRNSLLAAQTEDLRRVMELLSIREQHARTLLIHYRWDVDK IFSLLVEKGKTCLYMGAGIMVDDHSDYSIRPCSSSTVTCEICMEDVPANMSTSMDCGHCFCNDCWTEHFIVQINEGQSRRIRCMAHKCNAICDEAVVRNL VKERHPDLAENFERFLLESYIEDNKTVKWCPSVPHCGNAMRVEGDPVCEVQCSCGMQFCFNCLAEAHSPCSCTMWKLWTKKCNDESENVIWITVHTKPCP TCQKPVEKDGGCNLVYCVCKQAFCWLCGGATGTAHTWDTIAGHSCGRFKEDVEIKKARAERDLYRYMHYYNRYKAHVDSIKLENKLEETINERVSVSEAK EWELRDFSWVTRSLNKLFRSRRVLSYSYAFAFYMFGLELFEGEMTAEDREIKQNLFEDQQQQLEANVERLSKYLEEPFDVYDVDKLMETRFQVINLTVLT DTRCKSMYGCIENFLLGSLSSLQLAIHAIAPYNSNGIEEASELPTELSIGNLGSNVTRLTFQQAWRFIYSGETTKREKPSGSGTLNAKECSVRKRVRKEV SGFFDLNMPAEVID

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10011309 [exp]	0	1
AT2G15900			Phox-associated domain;Phox-li...		Lus10023847 [exp]	2.4	0.8792
AT5G55560			Protein kinase superfamily pro...		Lus10001739 [exp]	2.8	0.8742
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10007964 [exp]	3.9	0.8683
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	6.2	0.8406
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	6.9	0.8681
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	7.0	0.8873
					Lus10007301 [exp]	8.8	0.8561
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10018445 [exp]	17.9	0.8441
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	20.5	0.8599
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	22.9	0.8766

Compare expression of checked genes

Lus10011309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.