Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34350 743 / 0 HDR, CLB6, ISPH CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040509 [exp] 944 / 0 AT4G34350 750 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10026322 [exp] 836 / 0 AT4G34350 760 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10042345 [exp] 780 / 0 AT4G34350 713 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10009762 [exp] 155 / 3e-45 AT4G34350 124 / 6e-34 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124604 [exp] 800 / 0 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Potri.009G111569 [exp] 800 / 0 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Potri.004G150400 [exp] 735 / 0 AT4G34350 682 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02401 [flax] [poplar] LYTB LytB protein
Representative CDS sequence Show only first row Show all	>Lus10011310 pacid=23149911 polypeptide=Lus10011310 locus=Lus10011310.g ID=Lus10011310.BGIv1.0 annot-version=v1.0 ATGGCCGTCTCGTTCCAGTTCTCTACGCTCTCGCTCAAAGCTGAGAGGTTCGCTTCGGAGACTCGAGGAGCTTTCGGAAGTCTCCGGAGGAGTGGAGGGC CTGCTTCCGTCCGGTGCTCCGGCGGCGGAGATGAATCGGCATCGTTGTCTGTGGAGTCGGAGTTTGATTCCAAGGTGTTCAGGCATAATTTGACCAGGAG CAAGAACTACAATCGGAGAGGGTTTGGACATAAGGAGGAGACTCTCGAGCTCATGAACCAGGAGTATACCAGCAGTGACATCATAAAGACACTGAAGGAG AATGGTTACGAGTATACGTGGGGGGAAGTGACTGTTAAGCTTGCAGAAGCTTATGGATTTTGCTGGGGAGTTGAGCGAGCTGTTCAGATTGCCTATGAAG CGAGGAAGCAGTTCCCGGATGAGAAGATTTGGCTGACCAATGAGATCATTCACAACCCAACTGTTAACAAGCGTTTGGAGGATATGCAAGTCGAAGAAAT CCCGATCGAGGAAGGACAGAAGCAGTTCGAAGTTGTGAACAATGGTGATGTGGTGATTCTGCCTGCTTTTGGGGCTGCAGTTGATGAGATGTTGACACTG AGCAACAAGAATGTGCAAATCGTCGATACTACTTGCCCCTGGGTGTCTAAGGTTTGGAACACTGTTGAGAAACACAAGAAGGGAGAGTATACTTCAATCA TCCATGGAAAGTATTCCCATGAGGAAACTGTAGCTACTGCATCTTTCGCTGGGAAGTACGTTATTGTAAAGAATATGGATGAGGCAATGTACGTCTGTGA TTATATTCTTGGAGGGAAACTCAATGGATCTAGCTCAACCAAAGAGGAGTTCCTAGAGAAATTCAAGTTTGCAGTGTCTGAGGGATTCGATCCTGACAGA GATCTTCTTAAAGTTGGCATTGCAAATCAAACTACAATGCTTAAAGGAGAAACTGAAGATATTGGAAAACTGTGCGAGAGGACCATGATGCAGAAGTACG GAGTTGAAGATGTCAACGATCACTTCATAAGCTTCAACACCATTTGTGATGCTACTCAGGAGAGACAAGACGCAATGTTCAAACTGGTGGAGGAAAAAGT GGACCTTATCCTAGTAGTTGGTGGATGGAACTCAAGCAACACGTCCCATCTTCAGGAAATCGCTGAGCTCCGCCGGATTCCTTCATACTGGATTGATACT GAACAGAGAATTGGCCCAGGCAACAAAATCGCCTACAAGCTAAACCATGGCGAGCTGGTCGAGAAAGACAACTTTCTGCCAAAAGGACGAATCACCATCG GGGTCACATCTGGTGCTTCCACTCCTGACAAGGTGGTGGAAGATGCTCTTACAAGGATTTTCAACATCAAGAAGGAAGAAGCCTTGCAGACGGTTTAG
AA sequence Show only first row Show all	>Lus10011310 pacid=23149911 polypeptide=Lus10011310 locus=Lus10011310.g ID=Lus10011310.BGIv1.0 annot-version=v1.0 MAVSFQFSTLSLKAERFASETRGAFGSLRRSGGPASVRCSGGGDESASLSVESEFDSKVFRHNLTRSKNYNRRGFGHKEETLELMNQEYTSSDIIKTLKE NGYEYTWGEVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWLTNEIIHNPTVNKRLEDMQVEEIPIEEGQKQFEVVNNGDVVILPAFGAAVDEMLTL SNKNVQIVDTTCPWVSKVWNTVEKHKKGEYTSIIHGKYSHEETVATASFAGKYVIVKNMDEAMYVCDYILGGKLNGSSSTKEEFLEKFKFAVSEGFDPDR DLLKVGIANQTTMLKGETEDIGKLCERTMMQKYGVEDVNDHFISFNTICDATQERQDAMFKLVEEKVDLILVVGGWNSSNTSHLQEIAELRRIPSYWIDT EQRIGPGNKIAYKLNHGELVEKDNFLPKGRITIGVTSGASTPDKVVEDALTRIFNIKKEEALQTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10011310 [exp]	0	1
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	2.0	0.9859
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	3.7	0.9835
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10032303 [exp]	3.7	0.9736
AT5G65380			MATE efflux family protein (.1...		Lus10012741 [exp]	5.1	0.9742
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	8.1	0.9799
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	8.2	0.9817
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10016962 [exp]	8.3	0.9823
					Lus10009731 [exp]	9.5	0.9703
AT2G40600			appr-1-p processing enzyme fam...		Lus10029040 [exp]	10.2	0.9735
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017981 [exp]	10.5	0.9803

Compare expression of checked genes

Lus10011310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.