Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49380 718 / 0 cytochrome c biogenesis protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040510 [exp] 801 / 0 AT1G49380 556 / 0.0 cytochrome c biogenesis protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G111692 [exp] 744 / 0 AT1G49380 778 / 0.0 cytochrome c biogenesis protein family (.1) Potri.T124704 [exp] 743 / 0 AT1G49380 776 / 0.0 cytochrome c biogenesis protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05140 [flax] [poplar] ResB ResB-like family
Representative CDS sequence Show only first row Show all	>Lus10011311 pacid=23149898 polypeptide=Lus10011311 locus=Lus10011311.g ID=Lus10011311.BGIv1.0 annot-version=v1.0 ATGGAGTCTCATGTAGCCAACAAATCTCTACACCAATCCCATCTCCTCACCTCTACGTTCAAGTTCAAGCCTCAATTCCACATCTCCCGCCCCAGAACCC TAACCTTGAGTTGCAATCTCAAATCCACCCGAGAAACGAAGCTGGAGAGCAGCAACAAAGCTTCGAAGAAGATCGAGCTATGGAACTCCTCTCCGCCGCC TCTTTCTTCGTCGGAGGACGACGCCGGCGGTAAGAAGAAGAAACCCAAGGGTGTGGCGTTGAAGTCGGCGAAGAAGCTGTCGAGGAAGGTTTTGAGCCTG CTTTCCAATTTACCCTTGGCCATTGGGGAAATGTTCGTCATTGCTGGGCTTATGGCTGTTGGCACAGTGATCGATCAAGGCGAATCACCAGAGCACTATT TCGAGCAGTTCCCGGAAGATTCGCCATTATTCGGATTCTTCACATGGAGATGGGTACTTACACTTGGCCTTGATCATATGTTCTCGTCGCCAGTTTTCCT GGCGACATTGGTGCTGCTGGGAGCATCTCTAATGGCGTGCACATACACAACTCAGATCCCACTCGTTAAGGTTGCAAGAAGGTGGAGCTTCTTGCAATCA GCTGAGGCTGTTCGTAAGCAGGACTTCTCTGATACTTTGCCAAGGGCTTCAGTTCAGGATCTTGGTGTTATCCTCATGGGAGCTGGATATGAGGTGTTCT CAAAGGGACCATGTCTGTATGCATTCAAGGGCCTGGTGGGTCGGTTTACGCCCATTGGAGTACACTTAGCCATGATCCTGATAATGGTAGGTGCAACATT AAGCGCCACAGGAAGTTTCAGAGGATCAGTTATAGTCCCACAAGGGTTGAATTTCGTTGTAGGAGATGTGTTGGGACCAAGTGGCTTCCTCTCCTTTCCT ACTGAAGCCTTCAGCACTGAGGTCCACGTCAACAAGTTCTCCATGGACTACTATGAAACCGGAGAGGTTTCGCAGTTTCGTACAGACCTTTCGCTGTACG ATCTCAACGGGAAGGAAGTGATGAGGAAGACGATCAGCGTGAACGATCCCTTACGGTATGGAGGGTTCACCATATACCAGACCGATTGGAGCATTTCAGC ATTGCAGGTACTGAAAGATGGCGAAGGACCTTTCAACTTGCCTATGGCGACTATACAGGAGAATGGAGATAAGAAGCTATATGGCACTTTCTTACCAGTT GGGAATGATGATTCTCCTAACGTCAAGGGAATATCGATGCTTGCTCGTGACTTGCAGTCGATCGTGCTGTACGATCAGGAGGGGAAGTTCGTTGGGGTTC GGAGACCGAACTCGAATCTTCCGATTGAGGTAGATGGTGTGAAGATTGTGATTGAAGATGCAATTGGAAGTAGTGGTCTTGAGCTCAAGACTGATCCTGG AGTTCCAGTTGTCTATGCCGGGTTTGGTGCCCTGATGCTCACTACATGTGTAAGCATCTTATCTCATTCACAGATATGGGCTTTACAAGATGGGACATCA GTGGTGATTGGAGGGAAGAGCAACCGGGCAAAGGGTGAGTTCGAAGAGCAGGTAAACCGGTTCCTGGATCAACTACCGGAGCTGGTCGAATCGCCATCAA ATCAGCAAGCCAACTAA
AA sequence Show only first row Show all	>Lus10011311 pacid=23149898 polypeptide=Lus10011311 locus=Lus10011311.g ID=Lus10011311.BGIv1.0 annot-version=v1.0 MESHVANKSLHQSHLLTSTFKFKPQFHISRPRTLTLSCNLKSTRETKLESSNKASKKIELWNSSPPPLSSSEDDAGGKKKKPKGVALKSAKKLSRKVLSL LSNLPLAIGEMFVIAGLMAVGTVIDQGESPEHYFEQFPEDSPLFGFFTWRWVLTLGLDHMFSSPVFLATLVLLGASLMACTYTTQIPLVKVARRWSFLQS AEAVRKQDFSDTLPRASVQDLGVILMGAGYEVFSKGPCLYAFKGLVGRFTPIGVHLAMILIMVGATLSATGSFRGSVIVPQGLNFVVGDVLGPSGFLSFP TEAFSTEVHVNKFSMDYYETGEVSQFRTDLSLYDLNGKEVMRKTISVNDPLRYGGFTIYQTDWSISALQVLKDGEGPFNLPMATIQENGDKKLYGTFLPV GNDDSPNVKGISMLARDLQSIVLYDQEGKFVGVRRPNSNLPIEVDGVKIVIEDAIGSSGLELKTDPGVPVVYAGFGALMLTTCVSILSHSQIWALQDGTS VVIGGKSNRAKGEFEEQVNRFLDQLPELVESPSNQQAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49380			cytochrome c biogenesis protei...		Lus10011311 [exp]	0	1
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	2.2	0.9555
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10029979 [exp]	4.0	0.9405
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10021361 [exp]	4.5	0.9201
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10019224 [exp]	6.5	0.9165
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10024385 [exp]	6.5	0.9125
AT2G31040			ATP synthase protein I -relate...		Lus10020702 [exp]	6.6	0.9003
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10035119 [exp]	7.1	0.9247
AT1G49380			cytochrome c biogenesis protei...		Lus10040510 [exp]	7.7	0.9191
AT5G46420			16S rRNA processing protein Ri...		Lus10004590 [exp]	9.5	0.9210
AT2G36145			unknown protein		Lus10022687 [exp]	10.7	0.9214

Compare expression of checked genes

Lus10011311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.