Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53500 128 / 2e-32 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 125 / 2e-31 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G42010 117 / 9e-29 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 114 / 1e-27 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G02430 103 / 5e-24 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 101 / 4e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 96 / 2e-21 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 92 / 3e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 79 / 9e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT3G54940 42 / 0.0005 Papain family cysteine protease (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012846 [exp] 337 / 2e-116 AT5G53500 74 / 4e-15 Transducin/WD40 repeat-like superfamily protein (.1) Lus10000387 [exp] 318 / 9e-108 AT5G02430 53 / 1e-14 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003206 [exp] 298 / 2e-95 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 287 / 4e-91 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017902 [exp] 262 / 9e-88 AT5G53500 58 / 3e-10 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023577 [exp] 257 / 6e-86 AT5G24320 50 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 253 / 1e-77 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 251 / 8e-77 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004667 [exp] 100 / 5e-26 ND 39 / 1e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144400 [exp] 200 / 8e-58 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 199 / 2e-57 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 151 / 3e-40 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G009700 [exp] 143 / 2e-37 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 133 / 6e-34 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 125 / 2e-31 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G057600 [exp] 121 / 7e-30 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G084600 [exp] 112 / 1e-26 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G122500 [exp] 108 / 1e-25 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 94 / 9e-21 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10011313 pacid=23149918 polypeptide=Lus10011313 locus=Lus10011313.g ID=Lus10011313.BGIv1.0 annot-version=v1.0 ATGTCTCATCATCACTTTCCCATTCCTCTCACGCTCCCGCCCAGCCTCCAAAAACAGATCCGTATACCATCATCAATCCACAATGATCCCGCAAATCATC AGCCGCCGTCGGCCAAGAATTCCGACGACAGTCTCTATCATCCTGCTCCATCTATTCCTCTTCTCGATACAGGGGTTTCGATGATGGAGGGCAGAGCTGG TGAGGATGGTTTGTTTGCGGCAGAGGAGGAGGCGGAGACGATGGACACTAGCGGTTCGCCGGATGAGTTTGACTGGAGGGACAAAGGAGCTGTAACCGAC GTCAAGATGCAGTTCGCCTATGGAAAGTGGGTTGTGACAATCGGTTGCCTCATGGTTTTTCATCATAATAACTACGTAATGTGTGTTCAGTACAATCCAG TGGATGAAGACTACTTCATCACTGGATCTATAGATGGAAAAGTTCGGATCTGGGAAGTGTCTGGATGTCGGTTAAATCGCTTACAGACATCAGAGAAATC GTTGCTGCAATCGCTTACCGTCCTGCTAATTAGAGATGCTGTAGCATGTTCACAAAGGAAAACAAAACTGCCTGGTAAGAGAATAACCAGCTTTGAGTTT TCTCAATGCCATCCGAGTAGAGTGATTGTGACGTCTGCTGATTTGCATTTGCAGCACGGATTTTTTTCAAAAAGGCACTTGCTTTCTTTTGCGCTTTTTA GTTTCGCACCTCCGAACCAGATGCATACCACTTTTACTTCGGACGGGAAGAGTGTTGTCTCGACGAGCGACGATTGGAATGCCTACATGTGGACCTACGA CAAACAGGAGAAGCCGTCCTCTCGAGCTAAGGTTATCCGCTCCTACGAGAGCTTCATTTCCCCTAATGCATCGGTCGCAATACCTTGCCGTGGGATGGAA ACTGAGCCAGCTGGCACAATCTCATCCCGACGACCTCAATCCGACCATAACCATCACAAGAGCATCATATCCTCGCCGTGTTGTTTCAACATCATTTGCG GGTTTTTGCTAGATTCTCTATCCAGGGGAGCTGCAACTTGGCAAGAGGGGAATCTTCCTCATTCGAAACTGGTACTCAAATCAGAGTTGAAGTTCAATCC TCAAATGTAG
AA sequence Show only first row Show all	>Lus10011313 pacid=23149918 polypeptide=Lus10011313 locus=Lus10011313.g ID=Lus10011313.BGIv1.0 annot-version=v1.0 MSHHHFPIPLTLPPSLQKQIRIPSSIHNDPANHQPPSAKNSDDSLYHPAPSIPLLDTGVSMMEGRAGEDGLFAAEEEAETMDTSGSPDEFDWRDKGAVTD VKMQFAYGKWVVTIGCLMVFHHNNYVMCVQYNPVDEDYFITGSIDGKVRIWEVSGCRLNRLQTSEKSLLQSLTVLLIRDAVACSQRKTKLPGKRITSFEF SQCHPSRVIVTSADLHLQHGFFSKRHLLSFALFSFAPPNQMHTTFTSDGKSVVSTSDDWNAYMWTYDKQEKPSSRAKVIRSYESFISPNASVAIPCRGME TEPAGTISSRRPQSDHNHHKSIISSPCCFNIICGFLLDSLSRGAATWQEGNLPHSKLVLKSELKFNPQM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53500			Transducin/WD40 repeat-like su...		Lus10011313 [exp]	0	1
					Lus10000293 [exp]	2.4	0.6687
AT1G01920			SET domain-containing protein ...		Lus10016435 [exp]	3.0	0.6712
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10042054 [exp]	8.8	0.6220
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002601 [exp]	12.0	0.6436
AT1G65000			unknown protein		Lus10026159 [exp]	12.2	0.6223
AT1G10030		ERG28	homolog of yeast ergosterol28 ...		Lus10007238 [exp]	19.0	0.5908
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	24.7	0.6677
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040148 [exp]	28.2	0.6137
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	37.9	0.6314
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10036590 [exp]	38.1	0.5984

Compare expression of checked genes

Lus10011313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.