Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49340 306 / 2e-95 ATPI4K ALPHA, ATPI4KALPHA Phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT1G51040 289 / 2e-95 Protein kinase superfamily protein (.1) AT5G09350 98 / 4e-23 PI-4KBETA2, PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 (.1) AT5G64070 98 / 4e-23 PI-4KBETA1, PI4KBETA1 phosphatidylinositol 4-OH kinase beta1 (.1) AT1G60490 43 / 0.0001 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011285 [exp] 331 / 4e-104 AT1G49340 3010 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10040481 [exp] 324 / 1e-101 AT1G49340 1556 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10034915 [exp] 77 / 8e-18 AT1G49340 60 / 1e-11 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10000833 [exp] 82 / 2e-17 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10002098 [exp] 69 / 3e-13 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Lus10030885 [exp] 47 / 6e-06 AT1G60490 1397 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10030605 [exp] 47 / 9e-06 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113700 [exp] 300 / 2e-93 AT1G49340 3062 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.004G152400 [exp] 298 / 1e-92 AT1G49340 2964 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.007G109000 [exp] 97 / 8e-23 AT5G64070 1412 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.005G059000 [exp] 94 / 2e-21 AT5G64070 1497 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.012G075100 [exp] 49 / 2e-06 AT1G60490 1388 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011315 pacid=23149905 polypeptide=Lus10011315 locus=Lus10011315.g ID=Lus10011315.BGIv1.0 annot-version=v1.0 ATGCCTTTCATGTCTGTTGTTCGTGAGCATATCGTTGATGGTTTTAATGACAAGGCCAATAATGTTTTTGAAAGGAAGTTTGACTTTTTCAATCAAGTTA CGTCAATCTCAGGTGTCCTCCTTCCACTTCCCAAAAATGAGCGACGGGTTGGAGATGATTGCAGACAAGATGTGCTTGTCCTTCAAGTGATAACACTTCT TAGAAACATTTTTGGTGCTGTCGGCCTTAATCTCTATTTGTTTCCCTACGGTGTCTTGCCAACGGGATCAGGGAGAGGTATTATCAAGCGCCGGTTATGC AGTTGCCAGTCTTCTACTCCAACGGGGACTTGCTTTTCGACGGCGATGGGAGGCTCGTCCACATTTGATTTTGGATTCATATTCGAAATCTCTCACGGTG GGAACATGCGGTTCGAGAGTGCACATTTCAAACTCAGCCACGAGATGACTCAGTTACTCGACCCATCAGGCGTCATGAAGAGTGAGACGTGGCACCAATT CGTCAGCCTGTGCGTGAAAGGGTACCTCGCTGCACGCAGGTACATGATGATGCTCGACAGTGGCCTACCTTGCTTCAGTCAAGGAGACCCGATCGGGAAC CTCCGAAAGAGGTTCCACCCGGAAATGAGCGAGAGGGAAGCCGCGAATTTCATGATCCATGTCTGCACAGACGCCTACAACAAATGGTCAACTGCAGGCT ACGACCTGATACAGTATCTGCAGCAAGGAATTGAGAAGTGA
AA sequence Show only first row Show all	>Lus10011315 pacid=23149905 polypeptide=Lus10011315 locus=Lus10011315.g ID=Lus10011315.BGIv1.0 annot-version=v1.0 MPFMSVVREHIVDGFNDKANNVFERKFDFFNQVTSISGVLLPLPKNERRVGDDCRQDVLVLQVITLLRNIFGAVGLNLYLFPYGVLPTGSGRGIIKRRLC SCQSSTPTGTCFSTAMGGSSTFDFGFIFEISHGGNMRFESAHFKLSHEMTQLLDPSGVMKSETWHQFVSLCVKGYLAARRYMMMLDSGLPCFSQGDPIGN LRKRFHPEMSEREAANFMIHVCTDAYNKWSTAGYDLIQYLQQGIEK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011315 [exp]	0	1
AT2G04865			Aminotransferase-like, plant m...		Lus10032799 [exp]	1.0	0.9704
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10001065 [exp]	4.9	0.8812
AT2G48060			unknown protein		Lus10035351 [exp]	6.3	0.6661
					Lus10003753 [exp]	8.8	0.7687
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	10.2	0.7687
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10032339 [exp]	11.4	0.7687
					Lus10027106 [exp]	12.4	0.6874
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000682 [exp]	12.5	0.7687
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10004408 [exp]	12.7	0.7224
AT4G15780		ATVAMP724	vesicle-associated membrane pr...		Lus10037511 [exp]	13.9	0.5979

Compare expression of checked genes

Lus10011315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.