Plant FIBer expression Database

Lus10011316 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51100 164 / 2e-50 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040511
[exp]
397 / 1e-141 AT1G51100 213 / 1e-69 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G132900
[exp]
184 / 2e-58 AT1G51100 196 / 1e-63 unknown protein
Potri.001G417350
[exp]
62 / 1e-12 AT1G51100 114 / 1e-33 unknown protein
PFAM info
Representative CDS sequence
>Lus10011316 pacid=23149928 polypeptide=Lus10011316 locus=Lus10011316.g ID=Lus10011316.BGIv1.0 annot-version=v1.0
ATGGCTACCACTCATTTCCCTTCCCTCTCAACCCCCCAATCCCACCATTTCCACACCACCCCAATCCCATTTCTAACATCCTGTTGGACCTTGAAATCAA
TCAGACGACCAATCACAAACTGCAGCACCACCACCAACAATGGCGGCGTTCCCTTCCCAGAACCGCAAAACCAGAGCTCAATCGACAATAATAACAAATC
CCCACTTCCCTTCGCCGAACCACCTCAGCGAGAACAAGACCAACAACCGCTCCCATTCTCCACCACTCTAAATAACACAAACTACCCGATCGAGAAGCGG
CGGAAATCCGAGATCCTCCGCGAGAAGAAGAAGAGCCAGAGGGAGCTGCTGAAGCCGGACTCCCCGCCGCCGAACTACGAGATCGGGTGGAAGAGGACGA
AGAATCTGGAGGCGATCAAAGCAGCCGTGGAGAAGCCGGTGGGGTACACGATAATGGATTTCATGGAGAAGCTGGAGATTCTGATTGCGCTGAGGCAGTT
TGGGTCGACCACGCTGCTGGCGAAAGTCGGGGAGATCGTGGCGGAGAGGGTTCGGGAGGAGGCCGAATTGCTAAAGGAAGAAGGGAAAGTTGAGGAGAGG
ATGGTTACGGAGCTTTTTAGGGTTTTGAGGTTGATGGAGATGGATCTTGCGATGGTTAAAGGCGCGGTGAAGGAGGAGACATTGGAGGAGAGGCTTGACC
AGGCTAAGGCTAGGTGTAGACAGGCTATTCTTGTTGCTGCTTCGTTTTGA
AA sequence
>Lus10011316 pacid=23149928 polypeptide=Lus10011316 locus=Lus10011316.g ID=Lus10011316.BGIv1.0 annot-version=v1.0
MATTHFPSLSTPQSHHFHTTPIPFLTSCWTLKSIRRPITNCSTTTNNGGVPFPEPQNQSSIDNNNKSPLPFAEPPQREQDQQPLPFSTTLNNTNYPIEKR
RKSEILREKKKSQRELLKPDSPPPNYEIGWKRTKNLEAIKAAVEKPVGYTIMDFMEKLEILIALRQFGSTTLLAKVGEIVAERVREEAELLKEEGKVEER
MVTELFRVLRLMEMDLAMVKGAVKEETLEERLDQAKARCRQAILVAASF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G51100 unknown protein Lus10011316
[exp]
0 1
AT1G51100 unknown protein Lus10040511
[exp]
2.0 0.9523
AT1G15980 PnsB1, NDH48, N... Photosynthetic NDH subcomplex... Lus10002312
[exp]
2.2 0.9358
AT3G50685 unknown protein Lus10026029
[exp]
2.4 0.9410
AT1G19150 LHCA2*1, LHCA2*... photosystem I light harvesting... Lus10039912
[exp]
2.4 0.9559
AT3G22330 ATRH53, PMH2 putative mitochondrial RNA hel... Lus10038975
[exp]
2.4 0.9344
AT5G52960 unknown protein Lus10027566
[exp]
5.5 0.9177
AT3G46780 PTAC16 plastid transcriptionally acti... Lus10016502
[exp]
7.2 0.9395
AT3G09580 FAD/NAD(P)-binding oxidoreduct... Lus10027764
[exp]
11.4 0.9247
AT3G27850 RPL12-C ribosomal protein L12-C (.1) Lus10022261
[exp]
13.0 0.9169
AT4G24700 unknown protein Lus10041942
[exp]
13.0 0.9228

Lus10011316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.