Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57610 806 / 0 ADSS, ATPURA adenylosuccinate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040512 [exp] 984 / 0 AT3G57610 804 / 0.0 adenylosuccinate synthase (.1) Lus10042358 [exp] 878 / 0 AT3G57610 818 / 0.0 adenylosuccinate synthase (.1) Lus10026310 [exp] 875 / 0 AT3G57610 812 / 0.0 adenylosuccinate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G087900 [exp] 794 / 0 AT3G57610 806 / 0.0 adenylosuccinate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00709 [flax] [poplar] Adenylsucc_synt Adenylosuccinate synthetase
Representative CDS sequence Show only first row Show all	>Lus10011317 pacid=23149942 polypeptide=Lus10011317 locus=Lus10011317.g ID=Lus10011317.BGIv1.0 annot-version=v1.0 ATGGACATCTCATGTTCCTTTGCTCTCGACTTCACTCCCCTCGCTACTCCTCACTCTAGGAAGTCCGTCCTCCGCCTCCCTATCTCCTCTGCCGCTCCTC GCCGCAACGCCGTCGTCTGTTCCTCCGTCAAGTCTTCCCCTGCTCTCACTGTCGCCGCTGGGGACAGCGAGAGTCGAATCGGATTGTTGAGTCAGGTCTC CGGAGTGCTCGGGTGCCAGTGGGGAGATGAAGGTAAAGGCAAGCTCGTCGATATCTTAGCTCAGCATTTCGACGTCGTAGCTCGCTGCCAGGGAGGAGCT AATGCAGGCCACACAATCTACAATTCAGAAGGCAAGAAATTCGCCCTGCACTTGGTTCCTTCAGGAATCCTCAACGAGGATACACTCTGTGTGATAGGGA ATGGAGTGGTGGTTCATCTCCCCGGTTTGTTCAAGGAAATCGATGGCTTGGAATCGAATGGGGTCTCTTGCAAAGGCAGAATACTCGTGTCCGATCGTGC TCACTTGTTATTCGATTTCCATCAAGAGGTTGATGGCTTGAGAGAAGCCGAACTTGCCAAGTCCTTCATTGGGACAACAAAGAGAGGGATTGGACCTTGC TACTCAAGCAAAGTGATTCGTAACGGAATCAGAGTAGGTGACCTCAGGCACATGGACACATTCCCTCAGAAGCTTGATCTTTTGCTGGCCGATGCTGCTT CGAGGTTCCAAGGTTTTAGCTACGGCCCCGAAATGCTCAGGGAAGAAGTCGAGAGGTACAAGAGGTATGCCGAGAGGCTGGAGCCTTACATTGCTGATAC TGTGTTTGTGATGAATGAGTTCATCACTCAGAAGAAGAAGGTTCTGGTCGAAGGTGGTCAGGCCACTATGCTCGATATTGATTTCGGAACTTATCCTTTC GTAACATCTTCTAGCCCCTCGGCTGGCGGAATCTGCACCGGTCTTGGTATTGCTCCACGGGCTCTCGGTGATCTTATCGGGGTGGTGAAAGCGTACACTA CTAGGGTTGGTTCTGGTCCTTTCCCGACCGAAATCTTGGGTCAAGGAGGTGATCTACTCAGGTTTGCCGGCCAGGAATTCGGAACAACAACTGGTCGCCC TCGTCGTTGTGGTTGGCTCGATATCGTGGCGCTGAAGTATTGCTGTCAGATTAATGGCTTCTCTTCCTTGAATCTAACCAAACTTGACGTTCTGTCCGAT CTCCCGGAGATTCAACTGGGAGTTGCTTACAAGCTAGCCGATGGTACACCGATCAAGTCATTTCCAGCGGATCTTCGCTTGCTTGAACGGATCAAGGTCG AGTATGAAGTTATGCCGGGATGGAAGACAGACATATCCTCTGCGAAGAGCTACTCAGACCTTCCAAAGGCAGCGCAGAGATACGTCGAGAGGATCGAAGA GCTCGTTGGCGTACCGATTCATTACATTGGCAATGGCCCGGGACGATCCGCTCTCATCTTCAAATAA
AA sequence Show only first row Show all	>Lus10011317 pacid=23149942 polypeptide=Lus10011317 locus=Lus10011317.g ID=Lus10011317.BGIv1.0 annot-version=v1.0 MDISCSFALDFTPLATPHSRKSVLRLPISSAAPRRNAVVCSSVKSSPALTVAAGDSESRIGLLSQVSGVLGCQWGDEGKGKLVDILAQHFDVVARCQGGA NAGHTIYNSEGKKFALHLVPSGILNEDTLCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQEVDGLREAELAKSFIGTTKRGIGPC YSSKVIRNGIRVGDLRHMDTFPQKLDLLLADAASRFQGFSYGPEMLREEVERYKRYAERLEPYIADTVFVMNEFITQKKKVLVEGGQATMLDIDFGTYPF VTSSSPSAGGICTGLGIAPRALGDLIGVVKAYTTRVGSGPFPTEILGQGGDLLRFAGQEFGTTTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSD LPEIQLGVAYKLADGTPIKSFPADLRLLERIKVEYEVMPGWKTDISSAKSYSDLPKAAQRYVERIEELVGVPIHYIGNGPGRSALIFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10011317 [exp]	0	1
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	2.6	0.9515
AT2G04390			Ribosomal S17 family protein (...		Lus10004208 [exp]	6.6	0.9499
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10014792 [exp]	7.3	0.9300
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10028413 [exp]	8.1	0.9328
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10034721 [exp]	11.6	0.9316
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	11.9	0.9470
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	13.3	0.9434
AT5G09450			Tetratricopeptide repeat (TPR)...		Lus10029043 [exp]	14.6	0.8668
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10038010 [exp]	14.7	0.9260
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10039722 [exp]	16.5	0.9057

Compare expression of checked genes

Lus10011317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.