Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68030 84 / 2e-17 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14770 67 / 2e-11 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G12400 43 / 0.0008 DNA binding;zinc ion binding;DNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012209 [exp] 1228 / 0 AT1G68030 97 / 5e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10026308 [exp] 188 / 2e-53 AT1G01150 63 / 6e-11 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10015562 [exp] 61 / 3e-09 AT1G14770 66 / 3e-11 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G053300 [exp] 150 / 1e-37 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G054401 [exp] 140 / 7e-35 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G005600 [exp] 59 / 1e-08 AT5G03780 94 / 1e-20 TRF-like 10 (.1) Potri.001G254300 [exp] 44 / 0.0004 AT5G12400 1020 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011320 pacid=23149953 polypeptide=Lus10011320 locus=Lus10011320.g ID=Lus10011320.BGIv1.0 annot-version=v1.0 ATGTCGGAACCGTCTCCACCCGACGGTGATACGATCCGTGTATGGTTCTGGCTCATCGAGTACATGGCAAGCTCTCCCCAGATAGACTGCACAACTCTGC ACAATTTGATAGAAGAGGCACCTGAATTACCGAACAATGTGAGGGAAAGGGTTGCTTTAAGGTGCTTAGAGGAATTGTTTGGTGCTTCACATGCTGTTGC CCACGAGCCTCCATCTGGTGCGGAGGCTAAAGTGGTTTTTGAATTGTCATCCACCTGCGAAGATGTGCTCGAATTGATATACCAGGAGACATCAGATTTG AGAAAGGGTGGACCAGAGCTCTTGAAATGGGATATTCACCCTTTCATTATGCACAAGAAAGCTTCCATGCCTAAGTGTTCTTTAGATCAGGTAATGTTGC AATATTGCTGCTATCTTGATAAGTTCCTTGTTTGCGGGAGAGAAATGCTGAAGTTACTGATCTGGTTTATGTTATTGTTTTGTTCATCTTCTAAGCAGCT AAAAGAGATGACTCGCCAAGGTTCTGGCCCATGCGCTGCATTGTTTGCCCAATTTAGTGGACTGGTTCATGGAAATAATGGTGGCAGTAGATCTACCATG GAAGAACCTGGTCAAAGTGAAGGGCTTAGGAGGACTGACTGTCAAACGGATGGTTATTGTGAACAAGCAGATGCCGCGAGCATTGAACAGGGCACATTAT ACACCGAGATGGCCAATGATAACAATTTGGTGGAACATTCTATGCAAGGTAACATTGGGGTAGCTGTAGAAGAGAATTCTGATTTAGGAGCAGAATCTCA AAGGGGAGTAACCATGGAGGGACTTGAGGAATCCAGTCTGTTGTCTAAGGATTTTCTGGCTGCAGCTGACCAGTCAGGGTCAAATCTCTGTGTCAAATGT GGCAAAAATGGTCAGTTGCTGCTTTGTGGTACAGATGGTTGCACGTTTGCAATTCATGGAAGCTGCTTCGGTTTGACACCAAGTTTTGATAATGGAGGAC AATTCTGCTGCCCCTTCTGTGCACATGATCTCGCTATTTCATACTACGAGAAAATGAAGGAACAGATGGCTGTGACATTGAAGCAACTAAGTTCATTTCT TCGTGGAGGATCAGAGAATCCATCACTGGAACACTCCAAGAGATCTGATGGGAAAGAGAATGGTAAACCAGGGGGTGTAGCTTCCGTTGCTAAAGTCAAC AGGATTGAAAATTTGGCAAAGGAAGGAAATCAAACAAATAGCGGGAGAGATGTAGATGAAGGCTATGATTACCTATTTGATAATGGAGCAGGTAGGTTGC AAAATTTTCCTGTGGCTGCCCATGGCATCACTGACAAACCAAATAGTGAAAAAGATTTGGCAGATGCTACTTGTAGTTCAAGAGATAGTGGGGAGAGGCA AATGGAAAGAACAACTATTGTGTGCCCATCAGTTAGAGTACCTGAAAGAAGGCAAGACCAAGATGTCTCAGACCCTTCACGCCTTGGTGATAGAGTGTCA GAAGACCAGGATCAAGCTGAAGGAGAGACTGCCAAGAAAGTTCCGGAAGAGATTGGTGTTCACAAGCAAGTGATGTGTATCCCTGCTGTCCCAACATTTG AGAATGGAGCAGGTAGGTTAAAACTTCCGCCTGTGGCTGCCCATGGCACCAACGGCGAACCAAATAGTGAACAAGGACCATCAGATGCTATTTGTAATTC AAGAGGTAGTGGGGAGAGGCAAATTGAAAGAAAAAATCTTGCGTGCGCATCAGTTAAAGTACCTGAAGGAAAGCAAGACCAAGATCTTCCAGACTCTATG TGCTTGGATGATAATCTATCACGTGAAAAGAAAGATATAACGTCAGAGGAGCAGGATCAAACTGAAGGAGCGACTAAGAAGAAAGTTCCAGATGCAATTG ATGTGCACCAACAAGTGATTCCTATCCCTGCTGTCCCAATAGGTAGGGTAGCCTCCGACAAAGGACATGATCAAACTGCAAGCTCGACCTACTCCTTGCG TTTGGGAAAGAGAGAACGGGGTACTTCATTGAATGAAGATTATTGTATGAGCAGTGAGGATGCAGCGAGTCCTCGAAAACGGAGGCGGAAAGTACGATGG ACAGCACCAGAGGAAAATATGTTGGAGGTTCGCACTTTGCTCAATTCTCATGACATGTTGTGGGTTGTATCACCGTATGTATTACTTCCTAGTCCGTTTT CCATTTTAGTCATCATTGATACATGTTCTTGCTTTTACTCCTGCAGGAAGCAGTGCAGAAATTTACCAGAAGTGGAATAA
AA sequence Show only first row Show all	>Lus10011320 pacid=23149953 polypeptide=Lus10011320 locus=Lus10011320.g ID=Lus10011320.BGIv1.0 annot-version=v1.0 MSEPSPPDGDTIRVWFWLIEYMASSPQIDCTTLHNLIEEAPELPNNVRERVALRCLEELFGASHAVAHEPPSGAEAKVVFELSSTCEDVLELIYQETSDL RKGGPELLKWDIHPFIMHKKASMPKCSLDQVMLQYCCYLDKFLVCGREMLKLLIWFMLLFCSSSKQLKEMTRQGSGPCAALFAQFSGLVHGNNGGSRSTM EEPGQSEGLRRTDCQTDGYCEQADAASIEQGTLYTEMANDNNLVEHSMQGNIGVAVEENSDLGAESQRGVTMEGLEESSLLSKDFLAAADQSGSNLCVKC GKNGQLLLCGTDGCTFAIHGSCFGLTPSFDNGGQFCCPFCAHDLAISYYEKMKEQMAVTLKQLSSFLRGGSENPSLEHSKRSDGKENGKPGGVASVAKVN RIENLAKEGNQTNSGRDVDEGYDYLFDNGAGRLQNFPVAAHGITDKPNSEKDLADATCSSRDSGERQMERTTIVCPSVRVPERRQDQDVSDPSRLGDRVS EDQDQAEGETAKKVPEEIGVHKQVMCIPAVPTFENGAGRLKLPPVAAHGTNGEPNSEQGPSDAICNSRGSGERQIERKNLACASVKVPEGKQDQDLPDSM CLDDNLSREKKDITSEEQDQTEGATKKKVPDAIDVHQQVIPIPAVPIGRVASDKGHDQTASSTYSLRLGKRERGTSLNEDYCMSSEDAASPRKRRRKVRW TAPEENMLEVRTLLNSHDMLWVVSPYVLLPSPFSILVIIDTCSCFYSCRKQCRNLPEVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10011320 [exp]	0	1
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10017070 [exp]	2.4	0.8424
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10012885 [exp]	4.0	0.8092
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10037787 [exp]	6.0	0.7875
AT2G36110			Polynucleotidyl transferase, r...		Lus10029479 [exp]	8.4	0.7547
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10028237 [exp]	10.8	0.7495
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	11.2	0.7697
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10030467 [exp]	14.7	0.7382
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10022438 [exp]	15.9	0.7906
AT1G78910			Pseudouridine synthase family ...		Lus10033350 [exp]	19.7	0.7682
					Lus10036951 [exp]	21.2	0.7306

Compare expression of checked genes

Lus10011320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.