Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45140 465 / 4e-152 NRPC2 nuclear RNA polymerase C2 (.1) AT4G21710 236 / 2e-67 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT3G23780 182 / 4e-49 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) AT3G18090 182 / 7e-49 NRPD2B nuclear RNA polymerase D2B (.1) AT1G29940 180 / 3e-48 NRPA2 nuclear RNA polymerase A2 (.1) ATCG00190 117 / 3e-27 ATCG00190.1, RPOB RNA polymerase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017504 [exp] 506 / 2e-168 AT5G45140 1652 / 0.0 nuclear RNA polymerase C2 (.1) Lus10028778 [exp] 486 / 1e-158 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1) Lus10011182 [exp] 232 / 7e-66 AT4G21710 2293 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10015446 [exp] 231 / 1e-65 AT4G21710 2298 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10026157 [exp] 196 / 1e-53 AT1G29940 1574 / 0.0 nuclear RNA polymerase A2 (.1) Lus10039677 [exp] 187 / 1e-50 AT3G23780 696 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10012207 [exp] 107 / 5e-28 AT5G45140 150 / 6e-44 nuclear RNA polymerase C2 (.1) Lus10027166 [exp] 107 / 4e-24 AT3G23780 1435 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003000 [exp] 472 / 1e-154 AT5G45140 1826 / 0.0 nuclear RNA polymerase C2 (.1) Potri.004G043200 [exp] 237 / 8e-68 AT4G21710 2271 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Potri.001G030750 [exp] 196 / 1e-53 AT1G29940 1674 / 0.0 nuclear RNA polymerase A2 (.1) Potri.018G019100 [exp] 188 / 7e-51 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.013G142232 [exp] 115 / 7e-27 ATCG00190 2015 / 0.0 RNA polymerase subunit beta (.1) Potri.006G263900 [exp] 90 / 7e-20 AT3G23780 253 / 5e-77 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04563 [flax] [poplar] RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04560 [flax] [poplar] RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7 CL0410 [flax] [poplar] LEF-8-like PF00562 [flax] [poplar] RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6
Representative CDS sequence Show only first row Show all	>Lus10011322 pacid=23149923 polypeptide=Lus10011322 locus=Lus10011322.g ID=Lus10011322.BGIv1.0 annot-version=v1.0 ATGTCAATTGTTAAATCATTGTGGAATCTGCAACTGAACTCCAGGATAGACAAGCAAAAGCTCGCAGCTCCGATGAAAACTGCAGTTGACAAGTATCAGC TCGTTCCCGAGTTCCTGAAGGTTAGAGGATTGGTAAAGCAGCATCTGGATTCTTACAATTACTTTGTAAATGTTGGTATAAAGAAAATTGTGCGAGGCAA TGATTGCATTGTATCCAAGATTAATGCCAGCAGCGACATCAAGTTTGAAGATGCGAGGATCGGCAAGCCTACTGAAAAACGGAACGACTATATCACTGTA CCACTTTCGCCACACACATGCCGTCTATCTGATCTCACGCTATGGGAATGGAAAGTGATCAAGAGGTTGTTCAAAATGTTAGGAAGAGTTCCTCGATATA GTCAACTCCTTCTGCCGTCTCTTGAGGAATGTGCAAGTCTTGATGTCTACACACAAACAAAAGCCTTGAAAGAGCTTGACACTAAATACCTTATCAATAA TGTCTTGGACGATGACGGAATCACTGCTCCTGGCCAAATAATCAGAACAAATGATATATATGTCAACGTAGAGTCTCCAATGGCCAAATCTGCAACGCAA CCAGTTCATATCATGGAAAAATTCAAAGGGCCTGACGGGGAGTCATGTGTAGTGGACAGAGTTTTTTTGTCTACAAATCACAAGAATGACCTGTGTATCA AATTGCTTTCTCGCCAAACTGGTAGGCCAGAGTTGGGTGACAAATTTAGTAGCAGACATGGTCAAAAGGGTGTCTGTGGAACGATCATTCAACAAGAAGA CTTTCCATTCTCAGAACGTGGGATTTGCCGCGATTTAATCATGAATCCACATGGATTTCCCAGTCGAATGACGGTTGGGAAGATGATAGAGCTTCTTGGA AGTAAAGCTGGAGTTTCTTCCGGTAGATGCCATTATGGGAGTGCATTCGGAGAACCAAGTGGCCATGCTGACAAGGTTGATGCTATAAGTGAAACTCTCG TCAGATATGGCTTTAGCTACAACGGCAAAGATATGATCTATTCAGGAATAACAGGCAGTCCGCTTTCAAGCTTTTACATTTTCATGGGGCCAATATACTA CCAGAAGTTGAAACATATGGTCCTAGATAAAATGCACGCTAGGGGTAAGGGCCCCAAGGTTATGTTCACTAGACAACCCACTGAAGGAAGAGCTCGAAAC GGAGGACTTCGAGTTGGAGAAATCGAACGCGACTGTTTGATTGGATATGGTGCTAGCATGCTGATCTACGAGCGCCTCATGCTTTCAAGCGATCCATTTG AAGTTCAGGTGCGCATGGTAATCCGGTATTGTACTAGAGATCAAACCGGTGACTGGTACCGGCTCACGATAAGGGCTTTACGATATGGTTTTGGAAAGCA CTGGAAATATCGGGTCGGTTTGCAGCTGATCTGTACACATATATGCATTGTAGGTTTGCCGAGTTTGCGGGTTGTTAGGGTATTACAACCACAAGATGAG AAGAGTGGAGACAACGTTGCAACAATGAAACTGCCCTATGCTTGCAAGCTTTTGATCCAGGAGCTTCAATCCATGAACATTGTGCCTCGTCTGGAACTCC AGGACCCAGATGCATGA
AA sequence Show only first row Show all	>Lus10011322 pacid=23149923 polypeptide=Lus10011322 locus=Lus10011322.g ID=Lus10011322.BGIv1.0 annot-version=v1.0 MSIVKSLWNLQLNSRIDKQKLAAPMKTAVDKYQLVPEFLKVRGLVKQHLDSYNYFVNVGIKKIVRGNDCIVSKINASSDIKFEDARIGKPTEKRNDYITV PLSPHTCRLSDLTLWEWKVIKRLFKMLGRVPRYSQLLLPSLEECASLDVYTQTKALKELDTKYLINNVLDDDGITAPGQIIRTNDIYVNVESPMAKSATQ PVHIMEKFKGPDGESCVVDRVFLSTNHKNDLCIKLLSRQTGRPELGDKFSSRHGQKGVCGTIIQQEDFPFSERGICRDLIMNPHGFPSRMTVGKMIELLG SKAGVSSGRCHYGSAFGEPSGHADKVDAISETLVRYGFSYNGKDMIYSGITGSPLSSFYIFMGPIYYQKLKHMVLDKMHARGKGPKVMFTRQPTEGRARN GGLRVGEIERDCLIGYGASMLIYERLMLSSDPFEVQVRMVIRYCTRDQTGDWYRLTIRALRYGFGKHWKYRVGLQLICTHICIVGLPSLRVVRVLQPQDE KSGDNVATMKLPYACKLLIQELQSMNIVPRLELQDPDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10011322 [exp]	0	1
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10015016 [exp]	1.0	0.8927
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	3.7	0.8856
AT2G33980		ATNUDT22	nudix hydrolase homolog 22 (.1...		Lus10041965 [exp]	4.2	0.7948
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10015666 [exp]	4.9	0.8665
AT3G57680			Peptidase S41 family protein (...		Lus10011300 [exp]	4.9	0.8061
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029707 [exp]	5.7	0.8517
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042744 [exp]	6.5	0.8436
					Lus10020856 [exp]	7.7	0.7058
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	11.2	0.8439
					Lus10032731 [exp]	11.3	0.7004

Compare expression of checked genes

Lus10011322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.