Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52630 748 / 0 MEF1 mitochondrial RNAediting factor 1 (.1) AT3G24000 425 / 9e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 415 / 3e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 416 / 8e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 404 / 2e-132 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 408 / 5e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 405 / 6e-132 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G25360 403 / 8e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 397 / 3e-128 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 396 / 3e-128 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012206 [exp] 1159 / 0 AT5G52630 786 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10039117 [exp] 425 / 1e-140 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 419 / 2e-138 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 412 / 2e-135 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001617 [exp] 408 / 1e-134 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040504 [exp] 402 / 5e-132 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 400 / 1e-130 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 400 / 2e-129 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034715 [exp] 392 / 1e-128 AT5G04780 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G053500 [exp] 872 / 0 AT5G52630 785 / 0.0 mitochondrial RNAediting factor 1 (.1) Potri.006G001200 [exp] 440 / 9e-148 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 437 / 2e-144 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G208000 [exp] 425 / 2e-140 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086900 [exp] 418 / 5e-138 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 412 / 4e-136 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 413 / 1e-134 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 411 / 1e-133 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 410 / 2e-133 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 406 / 4e-133 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011323 pacid=23149892 polypeptide=Lus10011323 locus=Lus10011323.g ID=Lus10011323.BGIv1.0 annot-version=v1.0 ATGCTTCTCCACAAAATCCCCTCCAAATCGCTGAAACAACAACCTCCGACGATTCTCTCATCTCTCTTACAGAACGTACTAACCCACCCCACACCTCCCC AAATCGATCCTCCTCCACAACGACAAACTGCTCACTGTAACAATTTCTCGTTCGAAGAGAAGTACAGGTACATATGCACGCTCCTCCTATCTCAAACCCG ATCCAGAAACCTTCGCAACGGCGTTCAGCTCCATACCCAGATCGTCAAAGCCGGATTGGGTACGATCCCGCTTGTGTCTCACTACCTCATCAATTTCTAC TCCAAGAACCAGCTGCCGATGCTGTCCGCTTCAGTGTTCGACGAAACCCAGGTGAGATCAGCCACCACTTGGAGCTCTGTAATATCTTCTTTAGCTCAGA ATGAGTTGCCCGGTCTTGCAATCGAGTACTTTCGTAAAATGCTCGAGGAAGGTTTTCTCCCCGACGACCATATTTACCCTAGCGCGACTAAGGCTTGCGC GATTATGGGCCGGTGGGATGTCGGGAAATCGGTACATTGTCATGTGGTGAAGACTGGGTACGATTTTGATGTGTTTGTGGGCAGTTCGTTGGTTGATATG TACTGTAAGTGTGGCAAGTTGGGGGATGCACGCAACCTGTTCGACGAAATGCCTGAGAGAAATGTGGTTTCGTGGAGTGGGATGATCTACGGGTATGCGC AAGTCGGGGAAGACGAGGAGGCGTTGAAGCTCTTCAAAGGAGCTTTATATGAAGGATCGGAAGTCAACGATTTCACATTCTCGAGCGTCATAAGGGTGTG TGGAGACTCGACATTGCTCGAGCTTGGGAAGCAGATACACGGGATGTGTTTCAAGACGAGCTACGATTCATCGAGCTTCGTGGGGAGTTCTCTGGTCTCG TTGTATTCGAGATGCGGAGTTATCGAAGAAGCTTACGTTGTCTTTGACGAAGTGCCTGTGAAGAATCTCGGTATGTGGAATGCCATGTTGATCGCTTGTG CACAGCACGGGCATACAAAGAAAGTGTTCGATCTGTTCGAAAAGGTGCAGAAAGGCAGTGGGATTAACCCGATCAAACCGAATTTCATAACTTTTCTGTG TTTGCTCTATGCTTGTAGCCACTCGGGGCTTGTGAAAGAAGGCCAAGCATATTTCGAACTAATGAAGAAGAGTAATGTTGAGCCGGGGGCTCAACATTAC TCTTCTTTGGTGGGGTTGCTAAGTAGGGCGGGTAAGTTAGAGGAAGCACTCAAGATCATAGACACAATGCCAATCGAGCCGACAGAATCTGTATGGGGAG CATTCATGACCGGGTGTCGAATCCATGGAAAAACCGAGCTAGCAGCTTATGCAGCTGATCAAGTGTTCCAGCTAGGCGCAGTGAGTCCGGGGCTACACGT TATACTCTCGAACGCTTACGCAGCTGCTGGGAGGTACGAGGACGCAGCGAGAGCAAGGAAGTTGCTTAGGGACCAAGGAATCAAGAAGGAGACCGGGTTA AGCTGGGTTGAGGAAGGGAACAAGGTGCACACATTCGCAGCAGGGGATAGGTCCCACTCAAGGACGAAGGAGATCTACGAGAAGCTGGAGGAGCTAGGGC ACAAAATGGAGGAGGCTGGATACGTTCCAGATACGAGCTTTGTGCTGCGAGAAGTTGGTGGTGATGAGAAGCATCAAACGATTAAGTATCACAGTGAACG TCTAGCAATTGCATTTGGGCTCATCGCATTCCCAAACACTGGTAGGCCGCTTAGGGTTATGAAGAATCTTAGGGTGTGTGGTGATTGTCACACAGCTATC AAGTTCATGTCCAAGTGCACCGGGCGGGTTATCATTGTTAGGGACAACAACCGGTTCCATCGGTTCGAAGATGGTAAGTGCTCTTGTGGTGACTATTGGT GA
AA sequence Show only first row Show all	>Lus10011323 pacid=23149892 polypeptide=Lus10011323 locus=Lus10011323.g ID=Lus10011323.BGIv1.0 annot-version=v1.0 MLLHKIPSKSLKQQPPTILSSLLQNVLTHPTPPQIDPPPQRQTAHCNNFSFEEKYRYICTLLLSQTRSRNLRNGVQLHTQIVKAGLGTIPLVSHYLINFY SKNQLPMLSASVFDETQVRSATTWSSVISSLAQNELPGLAIEYFRKMLEEGFLPDDHIYPSATKACAIMGRWDVGKSVHCHVVKTGYDFDVFVGSSLVDM YCKCGKLGDARNLFDEMPERNVVSWSGMIYGYAQVGEDEEALKLFKGALYEGSEVNDFTFSSVIRVCGDSTLLELGKQIHGMCFKTSYDSSSFVGSSLVS LYSRCGVIEEAYVVFDEVPVKNLGMWNAMLIACAQHGHTKKVFDLFEKVQKGSGINPIKPNFITFLCLLYACSHSGLVKEGQAYFELMKKSNVEPGAQHY SSLVGLLSRAGKLEEALKIIDTMPIEPTESVWGAFMTGCRIHGKTELAAYAADQVFQLGAVSPGLHVILSNAYAAAGRYEDAARARKLLRDQGIKKETGL SWVEEGNKVHTFAAGDRSHSRTKEIYEKLEELGHKMEEAGYVPDTSFVLREVGGDEKHQTIKYHSERLAIAFGLIAFPNTGRPLRVMKNLRVCGDCHTAI KFMSKCTGRVIIVRDNNRFHRFEDGKCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	0	1
AT3G55605			Mitochondrial glycoprotein fam...		Lus10030157 [exp]	2.0	0.8700
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10012994 [exp]	3.0	0.8398
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10017386 [exp]	3.2	0.8357
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	3.5	0.8515
AT3G45090			P-loop containing nucleoside t...		Lus10021446 [exp]	6.7	0.8087
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001017 [exp]	7.7	0.8390
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	8.5	0.8206
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10006419 [exp]	8.8	0.8100
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	9.2	0.8105
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	9.8	0.8040

Compare expression of checked genes

Lus10011323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.