Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22730 753 / 0 MA3 domain-containing protein (.1) AT4G24800 595 / 0 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) AT5G63190 593 / 0 MA3 domain-containing protein (.1.2) AT3G48390 580 / 0 MA3 domain-containing protein (.1) AT5G57870 60 / 5e-09 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT4G30680 50 / 3e-06 Initiation factor eIF-4 gamma, MA3 (.1) AT2G24050 50 / 8e-06 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012205 [exp] 810 / 0 AT1G22730 560 / 0.0 MA3 domain-containing protein (.1) Lus10018085 [exp] 607 / 0 AT4G24800 995 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10042080 [exp] 600 / 0 AT4G24800 974 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10012204 [exp] 293 / 2e-95 AT1G22730 117 / 1e-30 MA3 domain-containing protein (.1) Lus10028156 [exp] 65 / 2e-10 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10042856 [exp] 64 / 5e-10 AT3G60240 970 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10010782 [exp] 56 / 9e-08 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10022168 [exp] 55 / 2e-07 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10036594 [exp] 44 / 0.0004 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G199200 [exp] 927 / 0 AT1G22730 828 / 0.0 MA3 domain-containing protein (.1) Potri.015G088300 [exp] 641 / 0 AT4G24800 1008 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Potri.012G091900 [exp] 632 / 0 AT5G63190 1022 / 0.0 MA3 domain-containing protein (.1.2) Potri.002G061800 [exp] 79 / 5e-18 AT1G22730 74 / 4e-17 MA3 domain-containing protein (.1) Potri.018G104100 [exp] 57 / 3e-08 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G182100 [exp] 57 / 6e-08 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.002G140200 [exp] 54 / 3e-07 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.006G265300 [exp] 51 / 2e-06 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G017600 [exp] 48 / 2e-05 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.014G052600 [exp] 46 / 0.0001 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10011324 pacid=23149910 polypeptide=Lus10011324 locus=Lus10011324.g ID=Lus10011324.BGIv1.0 annot-version=v1.0 ATGGAGGGTTTTGTATCAAAAGAACACCAGGAGCTTGCGAGATCAGCTGTGGAGAGTGCAGATGCTTTATCTGTTTCTACATTGCAGATCTCCCCGGGCT CATCCTCCTCTCTCAAGTCCTCTTCATCCAATGGGAATGGAAAGCTCCCTCCCATTGCCACACAACAAAATTCACATGACAAGGAGGCACGTTCTTACAT GGATGGCCACCCTAATAAAGGTGGTTCTGATGATGCTTTGTACAATAACGATCCAAAAGATCCAAACTACGATAGCACAGAGGAACAAGAAGTTCAGATA ACACCTTCAAAGTTTGATGACTATAAAAGGAAAGCAACAATAATAGTGGAAGAATACTTCACAACTAGTGATGTTGTATCAACAGCTAATGAACTGAGGG AACTCAGAATGCCCAGTTTTAGTTATTACTTTGTCAAGAAACTGGTGTCCATGGCAATGGACAGGCATGACAAAGAAAAGGAAATGGCTGCCGTTCTTTT ATCCACTCTCTATGCAGAGGTCTTTGAGCCTTCACAAGTTTATAAGGGTTTCAGCAAGTTGGTGGAATCCGCAGATGACTTGATTGTAGACATACCTGAC ACTATTGATGTTCTTGCTCTGTTCATCGCCAGAGCTGTGGTGGATGACATACTTCCACCTGTGTTCTTGAGGAAGCAACTGGCTTGTTTACCAGCAGATT CCAAAGGGGTTGACGTGTTGAGGAGAGCGGAGAAGGGTTATTTAGCAGCTCCTCTCCATTCTGAAATCATTGAGCGAAGATGGGAAAGTAGCATGAATAA GTCGGTGGATGATGTGAAGGTCAAGATAAACAACCTGTTGGTAGAGTACGTAGCCAGTGGTGATAAGAATGAGGCTTGCAGATGCATCAAGGAACTGAAA GTTCCGTTCTTTCACCACGAGATAGTTAAGCGAGCTCTGCTGATGGCCATGGAGAGACAGCCAGTCGAAGGTCAACTGCTGGATCTGCTCAAGAAAGCAA CAGAAGTAGGGTTGATAAATTCCAGCCAAGTCACTAAAGGGTTTGGGAGGATTATAGACGTCATTGATGACTTGTCACTTGACATTCCTAATGCAAGAGG GATTCTCAAATCTTTGATATCTAAAGCAGCATCAGAAGGATGGCTGTCTGCTTCGTCCCTGAAGTCGCTTTCACTACCTTCCCCAAAAGGACCTATGGAA GATGGTGCTGCAAAGATCTTCAAGCTGAAGGCACAATCCATCATTCAGGAGTATTTCTTGTCAGGTGATATAGCAGAGGTTAGTGATTGTATTGAATCAG AGAACAGTTCTTGCTCACCTCAACTAAATGCTATGTTCATCAAAAGACTGGTGACTCTAGCAATGGATAGGAAGAATCGAGAGAAGGAAATGGCTTCCGT GCTACTCTCGTCTCTGTGTTTCCCTACTGATGATGTTGTACATGGATTTGTTATGCTAATCGAATCAGCAGACGACACAGTCTTAGATAACCCAATTGTG GTTGAAGATCTCGGAATGTTCGTAGCAAGAGCTGTCGTGGACGAAGTCATTGCCCCGCAGCAGCTGGAAGAAATCGGAAACCAATTCCTCGGGACAGACT CGACTGGTAACAAGGTCCTGCAAATGGCAAAGTCACTGCTAAAGGCCAGGCTCGCGGGGGAAAGGATCCTAAGGTGCTGGGGTGGTGGAGGAAGTAGTAG CAAGAACGGCTGGGCAGTCGAAGACATCAAAGACAAAATCGGCAAGCTGCTTGAAGAGTTCGAATCTGGAGGCGACGTGAGGGAAGCCTGCCGCTGCATC AAAGAACTCGGGATGCCCTTCTTCCACCATGAAGTCGTGAAGAAAGCACTGGTGAAGATTATGGAGAGCAAGATCGAGAAGCTCTGGGGCCTTCTCAACG AGTGCTTCCGATCGGGGCTCATTACAACGTATCAGATGACCAAGGGCTTTGGCAGGGTTGCAGAGTGTCTCGAGGACCTGCGGCTCGATGTCCCCGATGC TGAAAAGCAGTTCGGGTTATACGTCGAGAAAGCCAAACTCGCAGGGTGGTTAGATTCCTCGTTCGGCCCGGCCAAATCAAGCTATGGTAAAGAGAATGGC ATAAATGTATAA
AA sequence Show only first row Show all	>Lus10011324 pacid=23149910 polypeptide=Lus10011324 locus=Lus10011324.g ID=Lus10011324.BGIv1.0 annot-version=v1.0 MEGFVSKEHQELARSAVESADALSVSTLQISPGSSSSLKSSSSNGNGKLPPIATQQNSHDKEARSYMDGHPNKGGSDDALYNNDPKDPNYDSTEEQEVQI TPSKFDDYKRKATIIVEEYFTTSDVVSTANELRELRMPSFSYYFVKKLVSMAMDRHDKEKEMAAVLLSTLYAEVFEPSQVYKGFSKLVESADDLIVDIPD TIDVLALFIARAVVDDILPPVFLRKQLACLPADSKGVDVLRRAEKGYLAAPLHSEIIERRWESSMNKSVDDVKVKINNLLVEYVASGDKNEACRCIKELK VPFFHHEIVKRALLMAMERQPVEGQLLDLLKKATEVGLINSSQVTKGFGRIIDVIDDLSLDIPNARGILKSLISKAASEGWLSASSLKSLSLPSPKGPME DGAAKIFKLKAQSIIQEYFLSGDIAEVSDCIESENSSCSPQLNAMFIKRLVTLAMDRKNREKEMASVLLSSLCFPTDDVVHGFVMLIESADDTVLDNPIV VEDLGMFVARAVVDEVIAPQQLEEIGNQFLGTDSTGNKVLQMAKSLLKARLAGERILRCWGGGGSSSKNGWAVEDIKDKIGKLLEEFESGGDVREACRCI KELGMPFFHHEVVKKALVKIMESKIEKLWGLLNECFRSGLITTYQMTKGFGRVAECLEDLRLDVPDAEKQFGLYVEKAKLAGWLDSSFGPAKSSYGKENG INV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22730			MA3 domain-containing protein ...		Lus10011324 [exp]	0	1
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	1.4	0.9232
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	2.8	0.8888
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	3.7	0.9009
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	5.5	0.8639
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	6.3	0.8725
AT5G46170			F-box family protein (.1)		Lus10023298 [exp]	6.3	0.8501
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	6.5	0.8903
AT3G16270			ENTH/VHS family protein (.1)		Lus10038289 [exp]	9.9	0.8103
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10017225 [exp]	10.2	0.8297
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	10.4	0.8475

Compare expression of checked genes

Lus10011324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.