Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38020 1263 / 0 EMB258, MAN, VCL1 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012203 [exp] 1290 / 0 AT2G38020 1021 / 0.0 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204400 [exp] 1446 / 0 AT2G38020 1285 / 0.0 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2) Potri.002G057800 [exp] 1412 / 0 AT2G38020 1275 / 0.0 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04840 [flax] [poplar] Vps16_C Vps16, C-terminal region PF04841 [flax] [poplar] Vps16_N Vps16, N-terminal region
Representative CDS sequence Show only first row Show all	>Lus10011325 pacid=23149924 polypeptide=Lus10011325 locus=Lus10011325.g ID=Lus10011325.BGIv1.0 annot-version=v1.0 ATGGCGAACGTCTCCGTCGCGGCGGAGTGGCAGCTCCTGATCAATCGGTACTACCGCAAACCGGAGATTTACCAAATGCGGTGGAGGCAAATAGACCTGA CGCGGAACAAGGTCGCCTGCGCGCCATTTGGTGGCCCGATCGCCATCATCCGCGACGATTCGAAGATCGTGCAGCTCTACTCCGAGTCAGCGCTCAGGAA GCTCCGCATCTTCAACTCCGCCGGCGTCCTCTTGTCGGAAACTGTATGGAAGCACCCTGGCGGCCGGCTGATCGGGATGTCGTGGACGGAAGACCAGACG CTGATCTGTATAGTTCAGGACGGCACGATTTACAGGTACAACATCCACGGGGAGTGTCTGGATCCTAATTACTCGATGGGGAAAGAGTGCTTCGAGCAGA ATGTGGTGGAATGTGTGTTCTGGGCGAATGGGGTTGTGTGTTTGACCGAGGCTGGGAAGTTCTTCTGTGTGGCGGATTTTAAGGATATCAAGGCGTATCA GCTGGCGGATCCTGGTGTTGAAGGGGACGATGAGCTGCCGCGTTGTATAGCTGTGATAGAGCCGCAGTACACGGTGTCTGGTAACGTGGAGGTGCTTTTG GGGATTGGGGATGGGATTGTCATCGTGGATGAGGATGACGCTAGGCACATTGACGGTGAGAAAGTGGAAGGACCTGTGCAGAAGATTGCAGTTACACGGG ATGGTAGGTTTTTGGCATGTTTTATGCATGATGGAAGGATGGTCGTGATGAATATGTCATTCGAGCCTCTATTTCAGTATCAATGCGAGTCAGCACTTCC TCCAGAGCAGATGGCTTGGTGTGCATTGGACAGTGTGCTTCTTTATTGGGACGATATGCTTTTGATGGTGGGTCCATCATCTGAAGATTCTGTGCGATAC ATCTATGATGAACCTGTGATCCTTATCCCTGAATGTGATGGAGTCAGGATACTATCTAACACAACCATGGAGTTCCTACAACGGGTACCTGATTCCATCG TTTCCATCTTCAAGATAGGAAGTACGTCACCAGCATCCTTGCTTTTCGATGCCTTGGATCATTTTGACAGGCGGAGCGCTAAGGCAGATGAAAACTTGAG GTTGATAAAAGCAGCCTTGCCCGAGGCTGTTGAGACATGTATTGATGCAGCAGGTCATGAATTCGATACTTTCCGTCAACAGACATTGCTTAGAGCTGCA AGCTATGTTGGCTTTGACAGCGATTTCCAACGGGAACGCATTCAGGAGATGTGTAAAACTTTACGGGTCTTAAACGCTGTTCGCAACCCTGAAATTGGCA TTCCTCTAAGCATTCAGCAGTACAAGACATTAACAGCACCTGTGCTGATTGCTCGTTTGATTAATGCCCACCAGCATCTCCTTGCTCTACGAATTTCTGA GTATATTGGAACAAATCAGGAAGTAGTAATAATGCATTGGGCATGTTCAAAGATAACAGCTTCTTTAGCAATTCCAGATGCAGCTCTTCTTGAAATTTTG CTTGACAAGCTGAGGTTGTGCAAGGGCATATCTTATGCAGCTGTTGCTGCTCATGCAGATAAAAGTGGCCGTCGGAAATTGGCAGCTATGCTTGTTGAAC ATGAACCACGCTCCTCCAAACAGGTTCCACTCTTATTAAGCATCGGAGAGGAGGATACAGCTCTTATAAAGTCGATGGAAAGTGGTGATACTGACCTGGT TTATCTTGTTCTGTTTCATATCTGGCAGAAGAGGCCAGCCTTGGAGTTTTTTGGGACAATACAAGCTAGACCGCTAGCACGGGATATGTTTATAACTTAT GCACGGTGTTACAAACATGAATTCTTGAAGGACTTTTTCCTATCAACTGGGCAACTTCAAGAGGTAGCATATCTTCTGTGGAAGGAATCGTGGGAAATAG TAAAAAACCCGATGGCAAGTAGAGGCTCGGCACTGCATGGTCCACGCATAAAGATGATCGAAAAGGCTCAGAATCTTTTTGCTGAAACAAAAGAACACAC CTTCGAATCAAAAGCTGCCGAAGAACATGCAAAACTAATAAGAATTCAACATGAACTAGAAGTGGCCACGAAACAAGCCATTTTCGTAGATTCGAGCATC AGTGATACAATCCGGACCTGTATTGTGCTGGGGAACAATAAATTCGCAAGTAAAGTGAAGACAGAGTTCAAGGTTTCTGAAAAGAGATGGTACTGGCTCA AAGTATTTGCTCTAGCAACGGTCGGAAACTGGGAAGCTCTCGAAAAGTTCTCAAGGGAGAAAAGGCCACCAATTGGCTACCGCCCATTTGTGGAAGCATG CATTGATGCCGACGAGAAAGGAGAAGCTCTCAAGTACATACCGAAACTCGCAGATCCCAGAGAAAGAGCTGAGGCATATGCTCGGATAGGAATGGCAAAA GAAGCAGCCGACGCTGCCTCTCAGGCAAAAGATGGCGAACTGCTTGGCCGACTAAGAATGAGCTTCTCGCAGAACACAGCCGCGTCATCCCTCTTCGATA CGCTACGCGATCGGTTATCCTTCCAAGGTGTCCCGTAA
AA sequence Show only first row Show all	>Lus10011325 pacid=23149924 polypeptide=Lus10011325 locus=Lus10011325.g ID=Lus10011325.BGIv1.0 annot-version=v1.0 MANVSVAAEWQLLINRYYRKPEIYQMRWRQIDLTRNKVACAPFGGPIAIIRDDSKIVQLYSESALRKLRIFNSAGVLLSETVWKHPGGRLIGMSWTEDQT LICIVQDGTIYRYNIHGECLDPNYSMGKECFEQNVVECVFWANGVVCLTEAGKFFCVADFKDIKAYQLADPGVEGDDELPRCIAVIEPQYTVSGNVEVLL GIGDGIVIVDEDDARHIDGEKVEGPVQKIAVTRDGRFLACFMHDGRMVVMNMSFEPLFQYQCESALPPEQMAWCALDSVLLYWDDMLLMVGPSSEDSVRY IYDEPVILIPECDGVRILSNTTMEFLQRVPDSIVSIFKIGSTSPASLLFDALDHFDRRSAKADENLRLIKAALPEAVETCIDAAGHEFDTFRQQTLLRAA SYVGFDSDFQRERIQEMCKTLRVLNAVRNPEIGIPLSIQQYKTLTAPVLIARLINAHQHLLALRISEYIGTNQEVVIMHWACSKITASLAIPDAALLEIL LDKLRLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALIKSMESGDTDLVYLVLFHIWQKRPALEFFGTIQARPLARDMFITY ARCYKHEFLKDFFLSTGQLQEVAYLLWKESWEIVKNPMASRGSALHGPRIKMIEKAQNLFAETKEHTFESKAAEEHAKLIRIQHELEVATKQAIFVDSSI SDTIRTCIVLGNNKFASKVKTEFKVSEKRWYWLKVFALATVGNWEALEKFSREKRPPIGYRPFVEACIDADEKGEALKYIPKLADPRERAEAYARIGMAK EAADAASQAKDGELLGRLRMSFSQNTAASSLFDTLRDRLSFQGVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10011325 [exp]	0	1
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	2.4	0.7940
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	3.7	0.7614
AT1G76270			O-fucosyltransferase family pr...		Lus10012270 [exp]	4.4	0.6467
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10035778 [exp]	8.5	0.7026
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10032234 [exp]	9.2	0.6682
AT4G02715			unknown protein		Lus10022059 [exp]	12.2	0.6388
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10028405 [exp]	13.1	0.7162
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10005873 [exp]	15.5	0.6547
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10037354 [exp]	16.9	0.7125
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027157 [exp]	18.0	0.7192

Compare expression of checked genes

Lus10011325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.