Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30500 82 / 5e-19 CCAAT NF-YA7 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) AT2G34720 82 / 7e-19 CCAAT NF-YA4 "nuclear factor Y, subunit A4", nuclear factor Y, subunit A4 (.1) AT1G54160 75 / 2e-15 CCAAT NFYA5, NF-YA5 NUCLEAR FACTOR Y A5, "nuclear factor Y, subunit A5", nuclear factor Y, subunit A5 (.1) AT1G72830 75 / 2e-15 CCAAT NF-YA3, ATHAP2C, HAP2C "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) AT1G17590 74 / 4e-15 CCAAT NF-YA8 "nuclear factor Y, subunit A8", nuclear factor Y, subunit A8 (.1.2.3.4) AT5G06510 72 / 8e-15 CCAAT NF-YA10 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) AT3G14020 72 / 2e-14 CCAAT NF-YA6 "nuclear factor Y, subunit A6", nuclear factor Y, subunit A6 (.1) AT3G05690 70 / 7e-14 CCAAT NF-YA2, ATHAP2B, HAP2B, UNE8 UNFERTILIZED EMBRYO SAC 8, "nuclear factor Y, subunit A2", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, nuclear factor Y, subunit A2 (.1) AT3G20910 67 / 7e-13 CCAAT NF-YA9 "nuclear factor Y, subunit A9", nuclear factor Y, subunit A9 (.1) AT5G12840 66 / 1e-12 CCAAT NF-YA1, ATHAP2A, HAP2A, EMB2220 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012202 [exp] 384 / 1e-135 AT1G30500 121 / 7e-34 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10023358 [exp] 84 / 1e-19 AT1G30500 192 / 5e-63 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10038448 [exp] 84 / 4e-19 AT1G30500 205 / 1e-66 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10016411 [exp] 80 / 3e-17 AT5G12840 140 / 1e-39 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10019708 [exp] 78 / 7e-16 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10021259 [exp] 71 / 9e-14 AT5G06510 178 / 5e-54 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10013592 [exp] 71 / 1e-13 AT5G06510 175 / 1e-52 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10030137 [exp] 51 / 3e-07 AT5G12840 170 / 5e-51 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10009944 [exp] 51 / 3e-07 AT5G12840 229 / 1e-73 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053500 [exp] 97 / 2e-23 AT1G30500 123 / 3e-34 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.001G266000 [exp] 84 / 1e-18 AT5G12840 103 / 1e-25 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.001G372100 [exp] 81 / 3e-18 AT1G30500 170 / 1e-53 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.011G098400 [exp] 81 / 3e-18 AT1G30500 171 / 4e-54 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.009G060600 [exp] 82 / 6e-18 AT5G12840 114 / 9e-30 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.016G068200 [exp] 81 / 1e-17 AT5G06510 194 / 2e-60 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.006G201900 [exp] 81 / 2e-17 AT5G06510 166 / 3e-49 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.006G145100 [exp] 80 / 5e-17 AT1G72830 168 / 3e-49 "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) Potri.018G064700 [exp] 74 / 6e-15 AT1G72830 172 / 5e-51 "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) Potri.001G257600 [exp] 66 / 3e-12 AT5G12840 216 / 1e-68 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02045 [flax] [poplar] CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Representative CDS sequence Show only first row Show all	>Lus10011326 pacid=23149904 polypeptide=Lus10011326 locus=Lus10011326.g ID=Lus10011326.BGIv1.0 annot-version=v1.0 ATGATGTACAGAAAGTTGGATCATGAAGCTGCAAACCAGCAGCATCAGTATAACCAACACTATGAATCATCTAATTCCCGGCCTATCTGGTATAGCAACA CGAACGGAAATAATGGCGGCATCATGCCGGAGAAGTTAGGAGAAATAAGCACCATAGATTTCTCCCAACTGGGTTGCAACAGCAGCAGTAGATATGATGT ACCAGACTCCAAATTCACAGACTCCAAGCCTCAGTTTTGGCTCTCTGATGGAATCGACAATACAGAAAGAATATTGCAGCAAACCTTGGATCCAGAGTCA GATTTGTCCGGTTCTCGACAAGGCTGTCAACAGCAGCATCATCATCATCCAGAAGCTATTAACGAGTTCATTGGATTACAACCCCAACTGGACTCCTCTA TTGGCCTCTCCTTTGTTGACCCTCAGTATCTTGGAGTTGACGTTCATCCCAACAAAATGGCGGTACCTGTACCAGTTGAATTGCCAGAAGAAGAACCTGT GTACGTGAATGCAAAGCAGTACCATGGAATTCTGAGGAGAAGACAGTCTCGAGCCAAGGCAGAGCTGGAGAAGAAAGTGGTCAAAGTTAGAAAGCCATAC CTGCACGAATCGAGACATTTACACGCGATGAGAAGGGAACGAGGGTGCGGAGGCCGTTTCCTCAGCACAAAGAAGAACCATCACCACCACCACCAACACC AACAGCAGCAGATTGGAGAAGGAAGCAGCGCTGATAACAAGAACAGCAAAAGCTCGCACGTTAATCCTACAGGGAACATTTGGATGGATGGAAAAAGAAG GATAAGAAACTGA
AA sequence Show only first row Show all	>Lus10011326 pacid=23149904 polypeptide=Lus10011326 locus=Lus10011326.g ID=Lus10011326.BGIv1.0 annot-version=v1.0 MMYRKLDHEAANQQHQYNQHYESSNSRPIWYSNTNGNNGGIMPEKLGEISTIDFSQLGCNSSSRYDVPDSKFTDSKPQFWLSDGIDNTERILQQTLDPES DLSGSRQGCQQQHHHHPEAINEFIGLQPQLDSSIGLSFVDPQYLGVDVHPNKMAVPVPVELPEEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKVRKPY LHESRHLHAMRRERGCGGRFLSTKKNHHHHHQHQQQQIGEGSSADNKNSKSSHVNPTGNIWMDGKRRIRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10011326 [exp]	0	1
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10038287 [exp]	7.3	0.7379
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	10.8	0.7304
AT1G22170			Phosphoglycerate mutase family...		Lus10020910 [exp]	15.5	0.6948
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10011826 [exp]	36.4	0.7252
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	37.1	0.6766
AT5G43180			Protein of unknown function, D...		Lus10025217 [exp]	41.8	0.6805
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10011875 [exp]	63.5	0.6794
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	71.3	0.5781
AT4G31680	B3	REM8	Transcriptional factor B3 fami...		Lus10010080 [exp]	74.7	0.6787
AT3G10120			unknown protein		Lus10021358 [exp]	75.8	0.6639

Compare expression of checked genes

Lus10011326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.