Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48040 387 / 6e-133 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 244 / 4e-77 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT2G39120 178 / 6e-52 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 177 / 1e-50 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G24320 166 / 4e-47 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 134 / 4e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 125 / 9e-32 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 119 / 4e-30 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G01037 119 / 2e-29 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 114 / 4e-28 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012201 [exp] 678 / 0 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 224 / 6e-69 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000847 [exp] 211 / 8e-65 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10038710 [exp] 195 / 5e-58 AT2G39120 467 / 4e-164 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10017896 [exp] 172 / 8e-48 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10035074 [exp] 172 / 2e-47 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10037979 [exp] 152 / 3e-43 AT2G39120 308 / 1e-104 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10027445 [exp] 125 / 2e-34 AT4G24320 206 / 9e-66 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 124 / 2e-31 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230900 [exp] 486 / 6e-172 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 242 / 5e-76 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.008G036600 [exp] 202 / 8e-61 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.004G223200 [exp] 192 / 1e-56 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 182 / 5e-51 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 129 / 3e-33 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 124 / 3e-31 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 119 / 4e-29 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 114 / 1e-27 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G169300 [exp] 112 / 6e-27 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10011327 pacid=23149933 polypeptide=Lus10011327 locus=Lus10011327.g ID=Lus10011327.BGIv1.0 annot-version=v1.0 ATGCAATCTTCGCATACACATATCGCTCTCATGTTTACATTGGGGAAGGCTGAAATCCCCGGGTTCCTCCATGGATTCCGTAAACCATTCAGCTGGCATC AAACTCTCAACTTAGTGAACGTCAAATTGAAATGGGTTAAAGATAGCGTACTGGACACTGTCGTCTCTGGTCAGAATGATCTCAAAGCCGTCTGCTCTCT AGTTTGCATAATCTCATCATCATCGCTGCCTGTACACTCACTCACCAAGCACCGTGGCCAGCTAGGGTTCCCTCACGATCTCAAGCTATCGACATTCGTC AGGCGATACCCTACGATCTTCGCCGAGTCTCGCAGCTTCTTCGACAGCGGCGGCACTCGCATTCCTTGCTTCGGATTGACACCCGAAGCAATGGAGATTC ACCACGACGAGATCAATCTCGTAGCTCGAATTCGAAACGATCTCTTGGATAGGCTTGCTAAGCTGCTGATGCTCACAAAAGAAAAGTGTCTTCCTTTACA GACTATTAACCAGCTGAGATGGGACTTGGGATTGCCGTACAGTTACCATGAATCTTTGATAATGCAGCATTTCAGCGATAGGTTTTGCTCCGTTCGTCTC CCTGATGATCGCCTCGGGCTGAAGCTGCTCAAATGGGATGACCGGCTCGCTGTCTCCGAATTACAGAAGAATGCACCTTTACAGCAGAATGAAGAAGACG TTAAAAGTGGTTGCTTGGCTTTTCCAGTTGGCTTCACTAGAGGGTTTGGTTTGAAGAGGAAATTCAGTGAATGGTTAGAAGAGTGGCAGAAGCTGCCTTA CACTTCCCCTTATGAGGATCCCTCGCATTTGGATGTAAGAACAGATGTATCTGAAAAAAGGATCGTTGGAGTTTTCCACGAGCTTCTTCATCTGAGCTTG GAGAAGAAAACCGAGAGGAAGAACGTGAGCAATCTACGGAAGCCTTTACGTCTGCCTCAGAAGTTTACGAGGGTGTTTGAGAGGCATCCTGGGATTTTTT ACATCTCTAAGAAGTGCGACACTCAGACTGTTGTGCTTCGAGAAGCATATGAGTGTGGCCGATTGGTTTATGAACATCCTCTCGTCGAGATTAGGAGTAA GTATGCAAGGTTGATGAAGAGAGGGTTTCTGGAGAGGAGCATGGGGTTACACAAGGGAAGTGAACAATCTGTGGGGGAAGAACACATACAGTAA
AA sequence Show only first row Show all	>Lus10011327 pacid=23149933 polypeptide=Lus10011327 locus=Lus10011327.g ID=Lus10011327.BGIv1.0 annot-version=v1.0 MQSSHTHIALMFTLGKAEIPGFLHGFRKPFSWHQTLNLVNVKLKWVKDSVLDTVVSGQNDLKAVCSLVCIISSSSLPVHSLTKHRGQLGFPHDLKLSTFV RRYPTIFAESRSFFDSGGTRIPCFGLTPEAMEIHHDEINLVARIRNDLLDRLAKLLMLTKEKCLPLQTINQLRWDLGLPYSYHESLIMQHFSDRFCSVRL PDDRLGLKLLKWDDRLAVSELQKNAPLQQNEEDVKSGCLAFPVGFTRGFGLKRKFSEWLEEWQKLPYTSPYEDPSHLDVRTDVSEKRIVGVFHELLHLSL EKKTERKNVSNLRKPLRLPQKFTRVFERHPGIFYISKKCDTQTVVLREAYECGRLVYEHPLVEIRSKYARLMKRGFLERSMGLHKGSEQSVGEEHIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10011327 [exp]	0	1
AT1G73970			unknown protein		Lus10000648 [exp]	1.4	0.9105
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043250 [exp]	3.0	0.8852
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10022861 [exp]	3.2	0.8884
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10029888 [exp]	6.5	0.8568
AT3G55060			unknown protein		Lus10030304 [exp]	12.4	0.8698
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10014707 [exp]	17.3	0.8603
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	18.8	0.8846
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	20.7	0.8647
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10024525 [exp]	21.2	0.8583
AT3G48900			single-stranded DNA endonuclea...		Lus10005744 [exp]	21.8	0.8742

Compare expression of checked genes

Lus10011327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.