Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57550 518 / 0 GK-2, AGK2 GUANYLATE KINAS 2, guanylate kinase (.1.2) AT2G41880 493 / 7e-175 AGK1, GK-1 guanylate kinase 1 (.1) AT3G06200 82 / 1e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041236 [exp] 89 / 1e-19 AT3G06200 341 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021947 [exp] 88 / 2e-19 AT3G06200 342 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053400 [exp] 566 / 0 AT3G57550 519 / 0.0 GUANYLATE KINAS 2, guanylate kinase (.1.2) Potri.016G054200 [exp] 555 / 0 AT3G57550 493 / 1e-174 GUANYLATE KINAS 2, guanylate kinase (.1.2) Potri.008G200600 [exp] 80 / 2e-16 AT3G06200 337 / 8e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G029400 [exp] 78 / 6e-16 AT3G06200 331 / 2e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00625 [flax] [poplar] Guanylate_kin Guanylate kinase
Representative CDS sequence Show only first row Show all	>Lus10011328 pacid=23149902 polypeptide=Lus10011328 locus=Lus10011328.g ID=Lus10011328.BGIv1.0 annot-version=v1.0 ATGGGGGAGGCACCAGCTTTCTACGCTGACAACCTTGAGAATGGACATGAAAACGGTTGTGATGTGAAATCCAAACCATCAAGCTTAACCTCCATTACCA TCCAGGACAAAACATATGTCATTGGTAGTAGCGATGACGGATTCGAGGTTCGGATCTGTGATAGAGCTACCGGGAATTGGGTGATTCCTACTGTTTTTGG AACAAAACCTCAGCCAGGTAAAGGCTATTCAGCTGTGGCGCTGAATGAAGACCGAATTGTGGTCATTAAGAAGGGAACTTCATCAGATGACTGCATTTGG TTCCTTGAGGTGGACACTCCATATGCCAGGGGGCAGAAGCAAGTTCTCGGGGGCTCCGAGGTTGTTGCTTGGAGCAAAGGTGTGAGGGGGAATGCTGAAA TACCGGTTGTGATTACCGGTCCTTCCGGGGTAGGTAAAGGGACACTAATTGCGAAGCTCATGGAGGAATTCCCGACCATGTTTGGATTCTCTGTGAGCCA TACGACCCGTGCACCGAGGGCCATGGAGAAGGACAGTGTGCACTACCACTTCTCCGAGAGAAGTGCTATGGAGAAGGACATCAAAGATGGCAAATTCCTC GAGTTTGCTTCTGTCCATGGCAATATCTATGGTACCAGCATTGAAGCTGTCGAAGTCGTTTCAGATTCTGGCAAGAGGTGCATCCTGGACATTGATGTGC AAGGAGCAAGGTCTGTGAAGGCAAGCCCTCTGGATGCAGTTTTCATCTTTATCCACCCCCCATCCATGGAGGAGCTCGAGAATCGCCTTCGTGCAAGAGG GACTGAGTCTGAGGAGCAGATCCTTAAACGACTCCGGAATGCAAAGGCCGAGATCGAGCAAGGGCAATCGTCTGGCATCTTTGATCATCTTCTGTTCAAT GACAATCTTGAAGACTGTTACCTGAGCCTCAAAAAAATTCTTGGTCTGGATGGAGGAGCACCGGCTGCTACCCCAAGATCAACAGCTCTAGGAATTGACC TCCCGGAGGAGCATTCAGTCTCTGTGATGGACTCCAAGATCATCATCAACGGCGGATCGTCAGAATTAGAGAAGGACTCGAAGAACTTGGTTGTGCTGGA TGTGTCATCTCTCAAAGGAGGAGCTCCGGGGCGGACAAGAGGGATCGAGGTCAACGCCGTTGACTCGTTCTCCGATGGATTGTCGAGCTGCTGA
AA sequence Show only first row Show all	>Lus10011328 pacid=23149902 polypeptide=Lus10011328 locus=Lus10011328.g ID=Lus10011328.BGIv1.0 annot-version=v1.0 MGEAPAFYADNLENGHENGCDVKSKPSSLTSITIQDKTYVIGSSDDGFEVRICDRATGNWVIPTVFGTKPQPGKGYSAVALNEDRIVVIKKGTSSDDCIW FLEVDTPYARGQKQVLGGSEVVAWSKGVRGNAEIPVVITGPSGVGKGTLIAKLMEEFPTMFGFSVSHTTRAPRAMEKDSVHYHFSERSAMEKDIKDGKFL EFASVHGNIYGTSIEAVEVVSDSGKRCILDIDVQGARSVKASPLDAVFIFIHPPSMEELENRLRARGTESEEQILKRLRNAKAEIEQGQSSGIFDHLLFN DNLEDCYLSLKKILGLDGGAPAATPRSTALGIDLPEEHSVSVMDSKIIINGGSSELEKDSKNLVVLDVSSLKGGAPGRTRGIEVNAVDSFSDGLSSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Lus10011328 [exp]	0	1
AT1G27180			disease resistance protein (TI...		Lus10017143 [exp]	2.2	0.9114
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10040335 [exp]	2.8	0.9090
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10002649 [exp]	4.1	0.8773
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	7.5	0.9047
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012632 [exp]	12.4	0.8985
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10027126 [exp]	14.2	0.8923
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	21.5	0.9025
AT1G74770			zinc ion binding (.1)		Lus10042188 [exp]	25.0	0.8571
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	25.9	0.8845
AT3G56770	bHLH	bHLH107	basic helix-loop-helix (bHLH) ...		Lus10038306 [exp]	28.8	0.8738

Compare expression of checked genes

Lus10011328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.