Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69040 503 / 4e-177 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 471 / 3e-164 ACR5 ACT domain repeat 5 (.1.2) AT1G76990 459 / 6e-160 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT3G01990 441 / 9e-153 ACR6 ACT domain repeat 6 (.1) AT1G12420 408 / 5e-140 ACR8 ACT domain repeat 8 (.1) AT4G22780 400 / 7e-137 ACR7 ACT domain repeat 7 (.1) AT5G25320 390 / 4e-132 ACT-like superfamily protein (.1) AT5G65890 364 / 3e-122 ACR1 ACT domain repeat 1 (.1.2) AT2G39570 47 / 3e-05 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT2G36840 44 / 0.0001 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003136 [exp] 827 / 0 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10036827 [exp] 483 / 1e-169 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10012550 [exp] 450 / 3e-156 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10041543 [exp] 447 / 5e-155 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10028646 [exp] 446 / 2e-154 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 446 / 7e-152 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 377 / 4e-127 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10019191 [exp] 296 / 2e-98 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 259 / 2e-82 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060100 [exp] 679 / 0 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 659 / 0 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.010G138600 [exp] 510 / 8e-180 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 507 / 9e-179 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 507 / 4e-178 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.005G185600 [exp] 458 / 1e-159 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.001G115600 [exp] 454 / 5e-158 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.002G074800 [exp] 452 / 3e-157 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.003G116600 [exp] 447 / 3e-155 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.001G327000 [exp] 444 / 5e-154 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10011329 pacid=23159224 polypeptide=Lus10011329 locus=Lus10011329.g ID=Lus10011329.BGIv1.0 annot-version=v1.0 ATGGATGTCTGGTCTCCTTCTGTCGCCATGGATGACGAGTTTGAGAAGCTCCTCATTCGTATGAACCCACCAAGAGTAACCGTCGACAATTCATCCAGCC GGAAAATCACCTTGATTAAGGTTGACAGTGCGAATAAGGATGGGAGTTTGTTGGAGGTGGTTCAGGTCCTCACTGATCTTGATCTCATCATTCGTCGAGC TTACATTTCCTCTGATGGTGAATGGTTCATGGATGTGTTTCATGTCACTGATCAGAATGGGAATAAGCTATCTGAGGGTGATGTTGTTGACAGAATTCAG CAGTCGTTGGGGCCGAGATCTCGAAGCAGTTTCCGGTCCTTGAGGCGATCGGTGGGGGTCCAAGCTGCAGCAGAAAACACAACCATCGAATTGACAGGAA GGGATCGGCCGGGGTTGCTCTCGGAAGTGTTTGCTGTTCTTGCTGACCTAAAATGCAATGTGGCTGCAGCTGAAGTCTGGACACACAATTTGAGGATGGC ATCGGTTGTTTACATCACTGACGAATCCACTGGGGTTCCGATCGATGACCCGGAGAGGCTTGACAAGATCAAGCAGCTTCTGCTGTATGTCTTGAAAGGG AATACAGCAGTGTCGGTGGGGTCTACTCATAAGGAGAGGAGGCTGCACCAGATGATGTATGCTGACCGTGACTACGATGACTTGGAGGAGTTCGAATCGG GTGGTGGACGTAGTAGTAGTAAGCGCATTGTGAATGTGGAGAATTGCTTGGAAAAGGGGTACACTGTGGTGAACTTGCGGTGTCCAGACCGGCCTAAGCT GATCTTCGATACAGTATGCACATTGACTGATATGCAATATGTTGTTTATCATGGTACAATCATAGCTGAAGGACCGGATGCTTATCAGGAATACTACATC AGGCATGCAGATGGATCACCTATTAGTTCGGAAGCAGAAAGGCAAAGGGTGATCAATTGCTTGGAGGCTGCTATCAAAAGGAGAACTTCCGAGGGGATAA GACTGGAGCTTTGTTGTGAAGACCGGGTAGGACTATTGTCAGACGTCACGAGGATATTTAGGGAAAACGGTCTTTCGGTGAGTCGAGCTGAGGTTACTAC AAGAGGCTCTCAGGCTGTGAATGCTTTCTATGTAACTGATGCATCAGGGTACACTGTGAAGAGTGAAACAGTTGAAGCAGTTAGGAATGAGATCGGACAG GCTATACTTCGCGTGAAGGAAGATTCGTACTCGAACTCGTCCTCGAGCTCGACACGGATGGAGCAAGGGAAATTCTCTCTGGGGTATATCTTCAAATCTA GATCAGAGAAGTTTCTGTACAACTTGGGGTTGATCAAGTCTTGTACTTGA
AA sequence Show only first row Show all	>Lus10011329 pacid=23159224 polypeptide=Lus10011329 locus=Lus10011329.g ID=Lus10011329.BGIv1.0 annot-version=v1.0 MDVWSPSVAMDDEFEKLLIRMNPPRVTVDNSSSRKITLIKVDSANKDGSLLEVVQVLTDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEGDVVDRIQ QSLGPRSRSSFRSLRRSVGVQAAAENTTIELTGRDRPGLLSEVFAVLADLKCNVAAAEVWTHNLRMASVVYITDESTGVPIDDPERLDKIKQLLLYVLKG NTAVSVGSTHKERRLHQMMYADRDYDDLEEFESGGGRSSSKRIVNVENCLEKGYTVVNLRCPDRPKLIFDTVCTLTDMQYVVYHGTIIAEGPDAYQEYYI RHADGSPISSEAERQRVINCLEAAIKRRTSEGIRLELCCEDRVGLLSDVTRIFRENGLSVSRAEVTTRGSQAVNAFYVTDASGYTVKSETVEAVRNEIGQ AILRVKEDSYSNSSSSSTRMEQGKFSLGYIFKSRSEKFLYNLGLIKSCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10011329 [exp]	0	1
AT5G55000		FIP2	potassium channel tetramerisat...		Lus10020270 [exp]	5.5	0.8627
AT1G75420			UDP-Glycosyltransferase superf...		Lus10028338 [exp]	7.5	0.8710
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	7.9	0.8761
					Lus10015758 [exp]	11.0	0.8814
AT2G14210	MADS	AGL44, ANR1	ARABIDOPSIS NITRATE REGULATED ...		Lus10028214 [exp]	19.6	0.8716
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10004088 [exp]	21.5	0.8609
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	27.0	0.8704
AT4G32175			PNAS-3 related (.1)		Lus10042121 [exp]	30.0	0.8533
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	32.1	0.8669
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	32.3	0.7767

Compare expression of checked genes

Lus10011329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.