Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13120 302 / 5e-104 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT3G62030 248 / 7e-83 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT2G29960 210 / 2e-68 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 203 / 9e-66 ROC7 rotamase CYP 7 (.1) AT2G21130 200 / 4e-65 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 199 / 9e-65 ROC1 rotamase CYP 1 (.1) AT2G16600 198 / 3e-64 ROC3 rotamase CYP 3 (.1.2) AT3G55920 199 / 7e-64 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G56070 194 / 2e-62 ROC2 rotamase cyclophilin 2 (.1.2) AT4G34870 186 / 3e-59 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003138 [exp] 423 / 5e-151 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10018238 [exp] 206 / 9e-67 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 205 / 3e-66 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10014846 [exp] 201 / 6e-64 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10038315 [exp] 199 / 6e-64 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10012167 [exp] 197 / 9e-64 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10007579 [exp] 196 / 3e-63 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10017258 [exp] 191 / 2e-61 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10030408 [exp] 192 / 4e-60 AT3G55920 333 / 5e-116 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060200 [exp] 340 / 9e-119 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.003G167700 [exp] 330 / 9e-115 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.002G185200 [exp] 244 / 3e-81 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.009G046500 [exp] 208 / 1e-67 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.001G251700 [exp] 205 / 2e-66 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.010G189000 [exp] 204 / 5e-66 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G168800 [exp] 199 / 1e-64 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 196 / 1e-63 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G021500 [exp] 193 / 2e-62 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.005G240200 [exp] 191 / 2e-61 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10011330 pacid=23159272 polypeptide=Lus10011330 locus=Lus10011330.g ID=Lus10011330.BGIv1.0 annot-version=v1.0 ATGGCGACCTCGTTTGCAACCCTGCCCAACGCTGGTTCACTCTCCACTCTACGAAGTGGCTCCCAGCTGAAATCATCGATCCCCAATTGCAGCACGGTCA AGCTCCCTGGTAGCAGCAGAAGTACACTTTCATCGTCGTCGTCCTTTGTAGCTCCTCTCAAACTCTCTTCCTCTTTTCAGAAGAGCGTAACCCGTCGTCT GCTCAGCTCTGTAGTTCGAGCTAGTGCTGAGAGTGCGGATTTGCAAGCCAAGGTTACAAACAAAGTGTATTTTGATATCAGCATTGGGAACCCGGTAGGG AAGCTTGCTGGGAGGATTGTCATTGGATTGTTTGGCGATGATGTTCCTCAAACTGCTGAGAATTTCCGTGCTTTGTGCACAGGAGAGAAAGGTTTTGGCT TCAAAGGCTCCGCATTCCACCGTGTCATCAAGGATTTCATGATTCAAGGAGGCGATTTTGACAAAGGAAATGGAACTGGAGGCAAAAGCATCTATGGCCG GACATTCAAGGATGAGAACTTCAAGCTGACTCATACTGGACCGGGAATTATTAGCATGGCGAATGCCGGCCCCAACACCAACGGTAGCCAATTCTTCATT TGCACTGTCAAGACCCCATGGCTAGACCAAAGGCACGTAGTGTTCGGACAAGTACTGGAAGGGATGGACATAGTGAAGCTGATCGAGTCGCAGGAGACTG ACCGAGGTGACCGCCCCAGGAAGAGGGTAGTGATTGCAGAGTGTGGTGAGCTTCCAGTGGCAGCCGCTTGA
AA sequence Show only first row Show all	>Lus10011330 pacid=23159272 polypeptide=Lus10011330 locus=Lus10011330.g ID=Lus10011330.BGIv1.0 annot-version=v1.0 MATSFATLPNAGSLSTLRSGSQLKSSIPNCSTVKLPGSSRSTLSSSSSFVAPLKLSSSFQKSVTRRLLSSVVRASAESADLQAKVTNKVYFDISIGNPVG KLAGRIVIGLFGDDVPQTAENFRALCTGEKGFGFKGSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGIISMANAGPNTNGSQFFI CTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPRKRVVIAECGELPVAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10011330 [exp]	0	1
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Lus10011493 [exp]	2.6	0.9037
AT5G41270			unknown protein		Lus10035306 [exp]	2.8	0.8738
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10003138 [exp]	3.2	0.8569
AT5G49170			unknown protein		Lus10024954 [exp]	3.7	0.8964
AT1G47740			PPPDE putative thiol peptidase...		Lus10032708 [exp]	6.3	0.8451
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10036723 [exp]	8.4	0.8688
AT1G62760			Plant invertase/pectin methyle...		Lus10031132 [exp]	10.4	0.8657
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	11.1	0.8814
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	11.2	0.8704
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10021901 [exp]	12.8	0.8561

Compare expression of checked genes

Lus10011330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.