Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50760 98 / 3e-26 SAUR-like auxin-responsive protein family (.1) AT5G20810 72 / 2e-16 SAUR-like auxin-responsive protein family (.1.2) AT3G20220 69 / 2e-15 SAUR-like auxin-responsive protein family (.1) AT3G43120 68 / 7e-15 SAUR-like auxin-responsive protein family (.1) AT3G20210 70 / 2e-14 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT3G12830 66 / 2e-14 SAUR-like auxin-responsive protein family (.1) AT2G24400 67 / 3e-14 SAUR-like auxin-responsive protein family (.1) AT1G56150 65 / 4e-14 SAUR-like auxin-responsive protein family (.1) AT3G61900 66 / 5e-14 SAUR-like auxin-responsive protein family (.1) AT5G10990 66 / 8e-14 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003140 [exp] 318 / 3e-113 AT5G50760 97 / 8e-26 SAUR-like auxin-responsive protein family (.1) Lus10034888 [exp] 68 / 1e-14 AT5G20810 210 / 2e-70 SAUR-like auxin-responsive protein family (.1.2) Lus10034507 [exp] 67 / 3e-14 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) Lus10026977 [exp] 65 / 3e-13 AT2G24400 184 / 1e-59 SAUR-like auxin-responsive protein family (.1) Lus10012426 [exp] 64 / 3e-13 AT1G75590 181 / 2e-59 SAUR-like auxin-responsive protein family (.1) Lus10012185 [exp] 63 / 3e-13 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10042374 [exp] 63 / 5e-13 AT5G10990 125 / 8e-38 SAUR-like auxin-responsive protein family (.1) Lus10026297 [exp] 63 / 5e-13 AT5G10990 125 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10033161 [exp] 63 / 6e-13 AT1G75590 187 / 4e-62 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G167400 [exp] 145 / 5e-45 AT5G50760 100 / 4e-27 SAUR-like auxin-responsive protein family (.1) Potri.001G060400 [exp] 134 / 7e-40 AT5G50760 71 / 5e-15 SAUR-like auxin-responsive protein family (.1) Potri.012G102700 [exp] 111 / 2e-31 AT5G50760 97 / 1e-25 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 72 / 2e-16 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 70 / 9e-16 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.006G137200 [exp] 71 / 2e-15 AT5G20810 201 / 1e-66 SAUR-like auxin-responsive protein family (.1.2) Potri.006G278100 [exp] 68 / 1e-14 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.008G003900 [exp] 67 / 2e-14 AT2G24400 110 / 1e-31 SAUR-like auxin-responsive protein family (.1) Potri.018G063400 [exp] 67 / 2e-14 AT5G20810 219 / 3e-74 SAUR-like auxin-responsive protein family (.1.2) Potri.009G127100 [exp] 66 / 2e-14 AT5G18080 103 / 2e-30 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10011332 pacid=23159256 polypeptide=Lus10011332 locus=Lus10011332.g ID=Lus10011332.BGIv1.0 annot-version=v1.0 ATGGATCAACCCAAGAAAAAGGGCAATCTAATCAGCAAGACGTGGGAGAAGTCATGCAAGCTCCTCCTCCTCCGCAAGAGGCCCTCGAGGACGGGCAGCT TCTACACCGACGACGGCGAAGATCCAAAACGGCGCCGTCATGGTAAGCGCCAGGTGGCACCGGAAGGGTGCTTCACGGTGTACGTGGGGCCAGAGAAGCA GAGGTTTGTGGTGATGACAGAGTACGCTAACCACCCGATGTTCCGGGTCCTGCTGGACGAGGCGGAGTCGGAGTTCGGGTACAACCCGGAAGGCCCGCTG GTGCTTCCTTGCGAGGTTGACTACTTCTGGAAAGTTCTGATGGATATGGACAGTGAAGTTGAAGAAGAGGCGGCGGAGAAGGAAGAGCTTGTTCATCAGA AGTCGTGTGGACGGTTTGCTAAGGCGGCTGGCAGTTATAACGGTTCTTATTACCATCGTCATCTCATCTGCCCGTCGCCGTTGATGGCTCTCAACCGTTA CGTCATATGA
AA sequence Show only first row Show all	>Lus10011332 pacid=23159256 polypeptide=Lus10011332 locus=Lus10011332.g ID=Lus10011332.BGIv1.0 annot-version=v1.0 MDQPKKKGNLISKTWEKSCKLLLLRKRPSRTGSFYTDDGEDPKRRRHGKRQVAPEGCFTVYVGPEKQRFVVMTEYANHPMFRVLLDEAESEFGYNPEGPL VLPCEVDYFWKVLMDMDSEVEEEAAEKEELVHQKSCGRFAKAAGSYNGSYYHRHLICPSPLMALNRYVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50760			SAUR-like auxin-responsive pro...		Lus10011332 [exp]	0	1
AT5G43200			Zinc finger, C3HC4 type (RING ...		Lus10019685 [exp]	1.4	0.9360
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	2.4	0.9385
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017487 [exp]	4.5	0.9236
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10020999 [exp]	5.1	0.9032
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	5.3	0.9029
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	5.5	0.9236
AT5G50120			Transducin/WD40 repeat-like su...		Lus10043466 [exp]	6.5	0.8962
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	7.5	0.9206
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	11.1	0.9248
AT5G17530			phosphoglucosamine mutase fami...		Lus10023518 [exp]	13.2	0.8756

Compare expression of checked genes

Lus10011332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.