Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14070 151 / 9e-48 ROXY2 Thioredoxin superfamily protein (.1) AT3G02000 144 / 7e-45 ROXY1 Thioredoxin superfamily protein (.1) AT3G21460 114 / 1e-33 Glutaredoxin family protein (.1) AT5G18600 110 / 4e-32 Thioredoxin superfamily protein (.1) AT4G15670 108 / 2e-31 Thioredoxin superfamily protein (.1) AT4G15700 108 / 2e-31 Thioredoxin superfamily protein (.1) AT3G62950 108 / 2e-31 Thioredoxin superfamily protein (.1) AT4G15680 108 / 4e-31 Thioredoxin superfamily protein (.1) AT4G15660 107 / 5e-31 Thioredoxin superfamily protein (.1) AT4G15690 106 / 1e-30 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003141 [exp] 207 / 8e-70 AT5G14070 84 / 2e-21 Thioredoxin superfamily protein (.1) Lus10035183 [exp] 146 / 9e-46 AT5G14070 148 / 6e-47 Thioredoxin superfamily protein (.1) Lus10041538 [exp] 136 / 8e-42 AT5G14070 134 / 3e-41 Thioredoxin superfamily protein (.1) Lus10012815 [exp] 121 / 2e-36 AT3G21460 171 / 3e-57 Glutaredoxin family protein (.1) Lus10033965 [exp] 120 / 8e-36 AT5G18600 148 / 5e-48 Thioredoxin superfamily protein (.1) Lus10002887 [exp] 117 / 6e-35 AT4G15690 149 / 3e-48 Thioredoxin superfamily protein (.1) Lus10038514 [exp] 112 / 3e-32 AT5G14070 122 / 2e-36 Thioredoxin superfamily protein (.1) Lus10023295 [exp] 109 / 3e-31 AT5G14070 123 / 5e-37 Thioredoxin superfamily protein (.1) Lus10040899 [exp] 100 / 3e-28 AT2G30540 140 / 5e-45 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325800 [exp] 176 / 9e-58 AT3G02000 155 / 6e-50 Thioredoxin superfamily protein (.1) Potri.001G060600 [exp] 172 / 2e-56 AT5G14070 147 / 1e-46 Thioredoxin superfamily protein (.1) Potri.003G167000 [exp] 171 / 8e-56 AT5G14070 150 / 9e-48 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 122 / 1e-36 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1) Potri.010G021800 [exp] 116 / 2e-34 AT5G18600 163 / 5e-54 Thioredoxin superfamily protein (.1) Potri.008G214800 [exp] 109 / 1e-31 AT5G18600 157 / 2e-51 Thioredoxin superfamily protein (.1) Potri.008G214600 [exp] 108 / 2e-31 AT5G18600 159 / 2e-52 Thioredoxin superfamily protein (.1) Potri.002G208400 [exp] 103 / 1e-29 AT2G30540 160 / 8e-53 Thioredoxin superfamily protein (.1) Potri.014G134300 [exp] 99 / 1e-27 AT2G30540 157 / 1e-51 Thioredoxin superfamily protein (.1) Potri.004G049800 [exp] 97 / 3e-26 AT1G28480 94 / 2e-25 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10011333 pacid=23159225 polypeptide=Lus10011333 locus=Lus10011333.g ID=Lus10011333.BGIv1.0 annot-version=v1.0 ATGTATACGCAGCAGTACTACCCTGACCTTCACCATTATCGCTACAACCCCTCCTCGGACCACCACCATCATCATCAGATGCAGCAGCCAGCATACTACG GCGGAGTTGCCCCGGCAGTGCCGGACCCGCTGGAGAAGGTGGCGAGGCTGGCGGCCGAGAGCGCGGTGGTGATATTCAGCCTCAGCACGTGCTGCATGTG CCATGCTGTCAAGCGACTCTTCTGCAGCATGGGAGTCAGCCCCAACGTGATAGAGCTCGACAACCACCCACGTGGCAGGGAGTTTGAACGCGCATTGCTA CGCCTACACGTCGTTGCCAATACTACAAGCTACGGCGGCACGTCGTCATCCGCCGTTCCATTGGTGTTCATCGGCGGGAAGCTTATCGGAGCGATGGATA GGGTCATGGCTTCCCACATTAACGGCACTCTCGTCCCGCTCCTTAAGGAAGCCGGCGCTCTTTGGCTCTAG
AA sequence Show only first row Show all	>Lus10011333 pacid=23159225 polypeptide=Lus10011333 locus=Lus10011333.g ID=Lus10011333.BGIv1.0 annot-version=v1.0 MYTQQYYPDLHHYRYNPSSDHHHHHQMQQPAYYGGVAPAVPDPLEKVARLAAESAVVIFSLSTCCMCHAVKRLFCSMGVSPNVIELDNHPRGREFERALL RLHVVANTTSYGGTSSSAVPLVFIGGKLIGAMDRVMASHINGTLVPLLKEAGALWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10011333 [exp]	0	1
					Lus10007549 [exp]	2.8	0.9890
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	3.3	0.9902
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10011906 [exp]	4.2	0.9893
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	4.5	0.9898
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009457 [exp]	4.5	0.9858
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	5.0	0.9887
AT5G01660			unknown protein		Lus10018307 [exp]	6.9	0.9880
					Lus10041871 [exp]	8.4	0.9876
					Lus10016534 [exp]	8.8	0.9839
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10003141 [exp]	9.0	0.9744

Compare expression of checked genes

Lus10011333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.