Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13150 527 / 0 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G13990 462 / 7e-155 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT5G58430 307 / 4e-96 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT5G50380 295 / 1e-90 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 292 / 3e-90 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 290 / 2e-89 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 288 / 8e-89 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G03540 279 / 3e-86 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT1G07000 278 / 4e-85 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT5G52340 252 / 3e-75 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003142 [exp] 1149 / 0 AT5G13150 548 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10015757 [exp] 746 / 0 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10037048 [exp] 574 / 0 AT5G13150 426 / 5e-139 exocyst subunit exo70 family protein C1 (.1) Lus10041536 [exp] 466 / 3e-155 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10012555 [exp] 469 / 5e-154 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10022459 [exp] 326 / 2e-103 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10016764 [exp] 320 / 2e-100 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10013163 [exp] 293 / 1e-92 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10008126 [exp] 299 / 2e-92 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060700 [exp] 648 / 0 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1) Potri.017G068000 [exp] 495 / 1e-167 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.001G325600 [exp] 473 / 8e-159 AT5G13990 662 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.015G094800 [exp] 321 / 5e-101 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 314 / 4e-98 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.013G152900 [exp] 302 / 6e-94 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.001G166400 [exp] 299 / 1e-92 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 296 / 1e-91 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.019G124000 [exp] 291 / 9e-90 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.008G017800 [exp] 259 / 1e-77 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10011334 pacid=23159200 polypeptide=Lus10011334 locus=Lus10011334.g ID=Lus10011334.BGIv1.0 annot-version=v1.0 ATGGACACGGATCATCAACGTAACGATCATATCATTTCCGATCAATCATCAAGCCACGATCACCCAGACGCAACCCTGAAAGAAGTCGATCGATTCATCG AACGCCTCATCCAGGCTCACCAAACGAACTCCAATCTACCTCCAGTCCCCGAATCAATCGAATCGATGTTCAAATCCGTCGAATCCATGATCGGAATGTA CGACGACAACTCCAGATTCGGCCAGAACGAGGCGCAAGACTCGTCTCTAATCTCCCATCTGAACCGCCTCGCCAAACTAATCAAGATCCTCTCCGATTTC TCCTCCGGCGAATCCGACCTCTCTTCAACCTTCAACCGTGCGGGAACAATCCAACACCTCGCCATGTCCTTCCTCGATAGCGAATTCCGCACTGCTCTCA ACAACTGCAAACACTGCTCCTCCTCTACCTCGGACTCCTCCGGTCCTGATTTGAAATCCTCCGGCACCAACCGAGTATCCAAACAACCGTCCTTCTCGGC GAAACACTCCGATCCGGATCAATCCACCGACGATTTTTATTTCCCAGGGTATCAACCTGAAGACATCTACAATATGAGCAAGATCGCCGCCGCGATGATC TCCTCAGGATTCGAGAACGAGTGTCGGTTGGTGTACGAATCCGTCCGGCGAACGACGCTCAACTGCAAACTCGACAAGCTAATGCATATAAACATAACAA CGGAAGAGATACACAAGATGGATTGGGAAACCCTGGAGGAAAAAATCGCGACGATGATAGACCTAATCCGTCACTGCTCCACCGCCCTCTTCACCGGAGA GCGTAACCTCTGCGACGCCGTTTTCACCAATTCCTCATCAATATACCAAGAAATTTTCGGCGATCTGGTCACGACAATGATCGACCGGTTCATCAATTTC GCTCGGGTCATCACCTCGACGAAATGCTCCGCCGAGAAGTTATTCAAATTCCTCGACATGTACGAGACGCTCCGCAAATTACGACCGGAAATCGAGAATT TCCTGCCCAAATCGGATTTCCACGAGACGGTTAACCAACTCGGTCAATCGGCGGTGAGCATGTTCTGCGAATTGGAAAACTCGATTCGAGGAGACAACAG CCGTACGCCGGTACCTAACGGCGGAATCCACCCTCTAACTCGCTACACGATGAACTACCTGAAATACGCGTGTGAATACAAAGACACTCTAGAGCAAGTC TTCCTCCAAAAGCTTGGACCCAATTCCCAACAACAACGACGACAAAATTCTGTTGACGCCATTAGCGTGGGTGCGAATGAGGACGGAACGCCACAGACGT CACCATTTTCGGTCCAATTGAACATGGTAATGGACTTACTAGACGAAAACCTAGAAGTGAAATCCCACCAATACAAAGATCCAGCACTGGGTTACATCTT TTTAATGAACAACGGTAGGTACATTTTACAAAAGATCAAGAGCTCGACGGAGATCCACAACATGATGGGAGTGACGTGGTGCCGGCGACGGTCGTCGGAT CTGAGGAAGTACCACAAGGAGTACACGAGGGAGACTTGGGGCAGAGTGTTGCATTCACTGAGGCACGAGGGTCTTTTGTCGACGAATGGGAAGATGGCGA AACCGATGTTGAAGGAGAGGTTCAAGATGTTTAACAACGCGATTGATGACATACACAAGACGCAGACGTCGTGGGTGGTCGCCGATGAACAGTTGCAGTC GGAGCTCAGAGTGTCGGTGTCGGCGGTAGTGATTCCGGCCTACAGATCGTTTCTTGGGAGGTTTCAGCAGTACTTGACGAATGGGAGGCAGACAGAGAAG TATATTAAATACCAGCCGGAGGATATTGAAAATGTGATCGAAGGGTTGTTCGATGGACAGCCAACGATGTCAAGGAAAAGGCCATAA
AA sequence Show only first row Show all	>Lus10011334 pacid=23159200 polypeptide=Lus10011334 locus=Lus10011334.g ID=Lus10011334.BGIv1.0 annot-version=v1.0 MDTDHQRNDHIISDQSSSHDHPDATLKEVDRFIERLIQAHQTNSNLPPVPESIESMFKSVESMIGMYDDNSRFGQNEAQDSSLISHLNRLAKLIKILSDF SSGESDLSSTFNRAGTIQHLAMSFLDSEFRTALNNCKHCSSSTSDSSGPDLKSSGTNRVSKQPSFSAKHSDPDQSTDDFYFPGYQPEDIYNMSKIAAAMI SSGFENECRLVYESVRRTTLNCKLDKLMHINITTEEIHKMDWETLEEKIATMIDLIRHCSTALFTGERNLCDAVFTNSSSIYQEIFGDLVTTMIDRFINF ARVITSTKCSAEKLFKFLDMYETLRKLRPEIENFLPKSDFHETVNQLGQSAVSMFCELENSIRGDNSRTPVPNGGIHPLTRYTMNYLKYACEYKDTLEQV FLQKLGPNSQQQRRQNSVDAISVGANEDGTPQTSPFSVQLNMVMDLLDENLEVKSHQYKDPALGYIFLMNNGRYILQKIKSSTEIHNMMGVTWCRRRSSD LRKYHKEYTRETWGRVLHSLRHEGLLSTNGKMAKPMLKERFKMFNNAIDDIHKTQTSWVVADEQLQSELRVSVSAVVIPAYRSFLGRFQQYLTNGRQTEK YIKYQPEDIENVIEGLFDGQPTMSRKRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10011334 [exp]	0	1
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10032528 [exp]	1.4	0.9655
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10023295 [exp]	5.0	0.9347
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	5.2	0.9448
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10014996 [exp]	7.1	0.9555
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10025707 [exp]	7.9	0.9271
AT1G77270			unknown protein		Lus10029729 [exp]	8.4	0.9230
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	12.6	0.9427
AT4G39790			Protein of unknown function (D...		Lus10041710 [exp]	15.0	0.9273
AT3G09510			Ribonuclease H-like superfamil...		Lus10000349 [exp]	15.5	0.9050
AT2G45260			Plant protein of unknown funct...		Lus10008587 [exp]	22.9	0.9229

Compare expression of checked genes

Lus10011334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.