Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13170 248 / 4e-82 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT5G23660 224 / 9e-73 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT3G48740 212 / 1e-67 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G50800 211 / 1e-67 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT4G25010 202 / 3e-64 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT5G50790 200 / 3e-63 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT2G39060 169 / 1e-51 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT4G15920 167 / 5e-51 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 142 / 2e-41 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT1G21460 127 / 1e-35 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003143 [exp] 516 / 0 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1) Lus10000310 [exp] 347 / 6e-121 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10015754 [exp] 343 / 2e-119 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10023249 [exp] 198 / 7e-63 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10024770 [exp] 196 / 2e-61 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10008861 [exp] 194 / 3e-61 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10009782 [exp] 195 / 5e-61 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10022436 [exp] 191 / 1e-59 AT5G50790 285 / 5e-96 Nodulin MtN3 family protein (.1) Lus10016742 [exp] 190 / 4e-59 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G166800 [exp] 239 / 1e-78 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.015G101700 [exp] 220 / 4e-71 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.001G060900 [exp] 220 / 4e-71 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.015G101600 [exp] 192 / 3e-60 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.015G101500 [exp] 190 / 2e-59 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.015G101400 [exp] 189 / 5e-59 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 186 / 7e-58 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.019G030500 [exp] 174 / 2e-53 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.013G013900 [exp] 157 / 4e-46 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 145 / 2e-42 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10011335 pacid=23159228 polypeptide=Lus10011335 locus=Lus10011335.g ID=Lus10011335.BGIv1.0 annot-version=v1.0 ATGGTGTTCCTTGCTCCGGTACCGACGTTCTGGCAAATACACAAAAAGAAGACAAGCGAAGGGTACAAGTCCCTCCCTTACCTGACTGCATTGTTTAGTT CGATGCTATGGCTTTACTACGCCCTCCTCAAGAAGGAAGACGCGTTCCTTCTGATGACGATCAACTCGTTCGGGTGCGTCATCGAGACCATCTACTCAGC CATCTTCATCGCCTACGCTCCCAAGAAAATGAGGATGTGGACGATCCTTCAATTTGTTGGCTTGAACGTCGTCTTGTTCGCCGGGATCCTTCTAGTTATA CAGTTTTTGGTGGTCGGCGAAAATTTAAAGGTGTCGATTTTGGGGTGGTTCTGTGTCGCCTTCGCCGTTAGTGTCTTTGCCGCACCGTTGAGTGTTATGG CGACGGTGATTAAAACGAGGAGTGTGGAGTACATGCCGTTTTCGCTCTCATTCTTCCTGACGTTGAGCGCGGTGGTTTGGTTTGGATACGGAGCGTTTAT TGAAGATCTTCGTGTTGCTCTTCCAAACGTGATAGGCTTTGTGTTTGGGCTGGTCCAGATGATTCTGTACGGAATTTACAGAAACAAGAAGCCCTTGGCC GAGCCCATGGACGACATTGAGAAGGAGAAGGAGAAGAGCCTTCAGCTTGAGAATCAGAAGTTGCCGGTGAAGATGAAGAGCATCCACCGGAGGAGCGGCC TGGGGACGCCGGAAGTTCATCTGTTCGAAGGGAAAGATTCTCGCCGCGCCGACGACGACAGTGACCATGAGACGAAGATGACTGCAGGAAGGAGAAGCTT TGACGATTCCCCTGTTTGA
AA sequence Show only first row Show all	>Lus10011335 pacid=23159228 polypeptide=Lus10011335 locus=Lus10011335.g ID=Lus10011335.BGIv1.0 annot-version=v1.0 MVFLAPVPTFWQIHKKKTSEGYKSLPYLTALFSSMLWLYYALLKKEDAFLLMTINSFGCVIETIYSAIFIAYAPKKMRMWTILQFVGLNVVLFAGILLVI QFLVVGENLKVSILGWFCVAFAVSVFAAPLSVMATVIKTRSVEYMPFSLSFFLTLSAVVWFGYGAFIEDLRVALPNVIGFVFGLVQMILYGIYRNKKPLA EPMDDIEKEKEKSLQLENQKLPVKMKSIHRRSGLGTPEVHLFEGKDSRRADDDSDHETKMTAGRRSFDDSPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	0	1
AT3G27250			unknown protein		Lus10014610 [exp]	1.7	0.8554
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	2.4	0.8731
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	3.2	0.8704
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019882 [exp]	3.2	0.8243
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10017201 [exp]	3.6	0.8027
					Lus10032385 [exp]	4.0	0.8248
					Lus10012752 [exp]	4.6	0.8151
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10010554 [exp]	6.7	0.7528
AT3G48660			Protein of unknown function (D...		Lus10035198 [exp]	8.4	0.8027
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	11.3	0.8124

Compare expression of checked genes

Lus10011335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.