Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43280 405 / 6e-144 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT4G16800 119 / 9e-32 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G16210 100 / 7e-25 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT1G60550 74 / 4e-15 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1) AT2G30650 71 / 6e-14 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G31810 68 / 8e-13 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30660 68 / 8e-13 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G65940 67 / 1e-12 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT3G06860 63 / 5e-11 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT4G29010 62 / 8e-11 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002583 [exp] 542 / 0 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10010994 [exp] 114 / 1e-29 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10016920 [exp] 95 / 7e-23 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10006501 [exp] 92 / 4e-21 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10037495 [exp] 92 / 1e-20 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10016919 [exp] 76 / 7e-17 AT4G16210 206 / 1e-67 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10037777 [exp] 80 / 1e-16 AT4G16210 360 / 1e-123 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10013023 [exp] 74 / 8e-15 AT1G60550 514 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10029142 [exp] 73 / 2e-14 AT1G60550 512 / 0.0 enoyl-CoA hydratase/isomerase D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061000 [exp] 434 / 2e-155 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.003G166700 [exp] 178 / 9e-56 AT5G43280 136 / 4e-40 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.001G153300 [exp] 116 / 2e-30 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.010G146400 [exp] 103 / 6e-26 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.008G104500 [exp] 102 / 9e-26 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.003G080800 [exp] 96 / 3e-23 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.008G220400 [exp] 90 / 5e-20 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.010G011900 [exp] 85 / 2e-18 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.018G004100 [exp] 76 / 2e-15 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G082900 [exp] 76 / 3e-15 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10011336 pacid=23159215 polypeptide=Lus10011336 locus=Lus10011336.g ID=Lus10011336.BGIv1.0 annot-version=v1.0 ATGGAGTCAAACTACCAATCCCTAGCAATCGACCGGAAATCCCCAAACTCATCCGTCATCCATCTCTACCTCAATCGCCCATCGCAGCTCAACGCTCTAT CTCGCGAATTCTTCGCGGAATTCCCCAAAGCCCTCGATTCACTGGACCAGAACCCTAGCGTCAGCGTCATCGTGCTCTCCGGTGCCGGCGACCACTTCTG TTCCGGAATCGATCTCAAAACGTTCGCTTCAATACAAACCAAGACTGTATCTTTGCCTCCCGGCCGCGCCAACGAGTATCTCCGGCGTGACATCAAGTTC TTGCAGGAGGCTATCACGGCGATCGAGCGGTGTCGGAAGCCGGTAATCGCATCAATCCGAGGGGCCTGTATCGGAGGGGCGATTGATATTGTGACAGCCT GTGATATACGGTATTGTACAAAGGACGCTTTTTTCTCGGTGAAAGAGGTTGATTTGGCCATTACTGCTGATTTAGGGACGCTTCAGAGGCTCCCTGGGAT TGTTGGGTATGGGAACGCGATGGAATTGTCTTTATCGGGTCGGAGGTTCTCGGGTCAGGAGGCGAAAGAGTTGGGTCTGGTTTCCAGGGTTTTCGGCTCC AAAGAGGAATTGGATGAAGGTGTAAGCATATTAGCAGAAGGAATCGCTGCAAAGTCACCGCTTGCTGTAATTGGAACAAAAGCTGTGCTTCTGAAGAGCA GGGATTTGAGTGTGGATCAAGGATTGGACTATGTAGCAACTTGGAACTCTGCAATGCTATTGTCTGATGACTTGATAGAAGCTGTATCTGCTCAGATGAA GAAAAGGAAGCCTGTTTTTGCTAAACTATGA
AA sequence Show only first row Show all	>Lus10011336 pacid=23159215 polypeptide=Lus10011336 locus=Lus10011336.g ID=Lus10011336.BGIv1.0 annot-version=v1.0 MESNYQSLAIDRKSPNSSVIHLYLNRPSQLNALSREFFAEFPKALDSLDQNPSVSVIVLSGAGDHFCSGIDLKTFASIQTKTVSLPPGRANEYLRRDIKF LQEAITAIERCRKPVIASIRGACIGGAIDIVTACDIRYCTKDAFFSVKEVDLAITADLGTLQRLPGIVGYGNAMELSLSGRRFSGQEAKELGLVSRVFGS KEELDEGVSILAEGIAAKSPLAVIGTKAVLLKSRDLSVDQGLDYVATWNSAMLLSDDLIEAVSAQMKKRKPVFAKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10011336 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011657 [exp]	3.2	0.9126
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10020019 [exp]	6.2	0.9109
AT1G01490			Heavy metal transport/detoxifi...		Lus10007911 [exp]	7.9	0.8937
AT4G29890			choline monooxygenase, putativ...		Lus10008571 [exp]	10.2	0.9129
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031753 [exp]	14.2	0.8574
					Lus10034710 [exp]	21.4	0.8837
AT4G26060			Ribosomal protein L18ae family...		Lus10011943 [exp]	23.7	0.9084
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10023545 [exp]	25.1	0.8876
AT5G65495			unknown protein		Lus10012729 [exp]	26.5	0.9108
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	26.6	0.9092

Compare expression of checked genes

Lus10011336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.