Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03980 169 / 5e-50 SGNH hydrolase-type esterase superfamily protein (.1) AT1G28650 159 / 2e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45910 157 / 7e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28640 157 / 9e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28670 155 / 4e-44 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28600 155 / 6e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28590 152 / 1e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G31550 151 / 2e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G27360 150 / 4e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28660 148 / 2e-41 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003516 [exp] 287 / 8e-97 AT5G03980 103 / 6e-26 SGNH hydrolase-type esterase superfamily protein (.1) Lus10020657 [exp] 180 / 8e-51 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013938 [exp] 154 / 2e-43 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000523 [exp] 149 / 9e-42 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019947 [exp] 139 / 1e-38 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10010208 [exp] 140 / 2e-38 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10024085 [exp] 140 / 3e-38 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015477 [exp] 139 / 6e-37 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015476 [exp] 136 / 6e-36 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G024966 [exp] 187 / 2e-56 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 187 / 2e-56 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 185 / 1e-55 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 185 / 2e-55 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024300 [exp] 181 / 6e-54 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.001G463900 [exp] 172 / 1e-50 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054300 [exp] 163 / 4e-47 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054400 [exp] 159 / 1e-45 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G015200 [exp] 144 / 7e-40 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G064100 [exp] 135 / 2e-38 AT1G28580 221 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10011338 pacid=23159251 polypeptide=Lus10011338 locus=Lus10011338.g ID=Lus10011338.BGIv1.0 annot-version=v1.0 ATGGGAATTCAATCGGAACAGTTGTCGCTTCGTTTCATCCAGATCGCTGCTTTACTATGCCTGACTTCCGGCCGGCCAATCCCACCGCCGTCGTTAGACT CCATGTACTACTTCGGGAACGGCGATCCCGCCACCTCCGACGGTCTTCTCATGGTCGATTACCTAGCTTCGGAGTTCAATCTGCCATCTCCGAATGCGGA TTTCAGGCAGCAGAAGACGTTGGATTACGATGTTTCCACTGCCATGGATGCTACCTTCTTTGTACGGAATGGTATGCCGCATGTTCAAATCATCCGTAAC CGATCGCTGCATTCGCAGTTCGATTCTTTCAGCGATTCCTTTGATTCTCTCTGCTCCTCTCCTCAAGATTGCAAGAGCAGGCTGAAGAAATCCGTTTTCG TTCTGGATCAAATTGGGAGTTCTGACTATCAGTACTCGTTCCTCAATGGCAAATCTCCAAGGGAGAGTTTAATTTATGTGGACTCAGTTGTCTTCACCAT CCAATACATTGTACAGAAACTGATAGAAAAGGGAGCTACGAAGCTGTTAGTAACAGGAACTCTCCCAATGGGTTGCCTTCCAGGCTACCTAACCCTCCTT CAAAACCAGACTCCGGATGACTCCTCACTGTACGATCGACACGGCTGTCTGGCATCGATGAACGAGTTCTCGAGCATCCACAACGAACGTCTACAAAGAG CGATTTCGGAACTGAGGGAGAAGCACCCGGACGTTCAGGTCGAATTTGCCGACACTAATAAAGCGTACATGGCCGTGGTTGACAACCATGCTCTGCTTGG ATTCAATAAACATACATTGTTGAAATCGTGTTGTGGGAGTGGTGGAGATTATAGTTTTGATCCTAAGAAGGTGTGTGGGAAGGAAGGGCTTCCAGTGTGT AGGGATCCTTCTAGCTATTTGAACTGGGATGGGTTCCATATGACTCAAGAGGCTATGAAGCTTGTTGTAGAGGCTTTGTTGTTCAATGGAAAAAATGGGC TTTTCTGA
AA sequence Show only first row Show all	>Lus10011338 pacid=23159251 polypeptide=Lus10011338 locus=Lus10011338.g ID=Lus10011338.BGIv1.0 annot-version=v1.0 MGIQSEQLSLRFIQIAALLCLTSGRPIPPPSLDSMYYFGNGDPATSDGLLMVDYLASEFNLPSPNADFRQQKTLDYDVSTAMDATFFVRNGMPHVQIIRN RSLHSQFDSFSDSFDSLCSSPQDCKSRLKKSVFVLDQIGSSDYQYSFLNGKSPRESLIYVDSVVFTIQYIVQKLIEKGATKLLVTGTLPMGCLPGYLTLL QNQTPDDSSLYDRHGCLASMNEFSSIHNERLQRAISELREKHPDVQVEFADTNKAYMAVVDNHALLGFNKHTLLKSCCGSGGDYSFDPKKVCGKEGLPVC RDPSSYLNWDGFHMTQEAMKLVVEALLFNGKNGLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10011338 [exp]	0	1
					Lus10039654 [exp]	1.4	0.7944
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10040662 [exp]	4.2	0.7930
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	5.5	0.7913
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10014963 [exp]	6.2	0.7443
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10042805 [exp]	6.3	0.7611
AT4G25150			HAD superfamily, subfamily III...		Lus10013478 [exp]	10.0	0.7868
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10038016 [exp]	11.8	0.7140
AT1G20225			Thioredoxin superfamily protei...		Lus10005616 [exp]	15.0	0.7867
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	20.0	0.7743
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	21.7	0.7665

Compare expression of checked genes

Lus10011338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.