Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003135 [exp] 130 / 9e-42 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G102100 [exp] 46 / 3e-08 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011339 pacid=23159221 polypeptide=Lus10011339 locus=Lus10011339.g ID=Lus10011339.BGIv1.0 annot-version=v1.0 ATGAAGGGTAGAGGAGCTATGCCAAGTGTTGTGGAGATTCTACTGTTTGTTGTGGTATTCATGGCTATGAATGCTTTGAGAGGTGAAGCAGTGTTTGGGA TAGACATGAACCCTTGCACACTCGTAAGCTGCACAGATGCCTGCAAGAATCTTCTTGGGGATAAGTTTGACAGTGCATCTTGCTACCAAGGAATCATCTG TATGTGCTTTGGTTGA
AA sequence Show only first row Show all	>Lus10011339 pacid=23159221 polypeptide=Lus10011339 locus=Lus10011339.g ID=Lus10011339.BGIv1.0 annot-version=v1.0 MKGRGAMPSVVEILLFVVVFMAMNALRGEAVFGIDMNPCTLVSCTDACKNLLGDKFDSASCYQGIICMCFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011339 [exp]	0	1
					Lus10003135 [exp]	1.0	0.9700
AT5G35732			unknown protein		Lus10006404 [exp]	2.0	0.9054
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10017878 [exp]	3.5	0.8960
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10010880 [exp]	4.7	0.8730
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10039992 [exp]	5.2	0.8526
AT4G20880			ethylene-responsive nuclear pr...		Lus10023347 [exp]	5.5	0.9025
AT1G47410			unknown protein		Lus10006481 [exp]	7.4	0.8928
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016497 [exp]	8.9	0.8575
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	9.0	0.8762
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	10.6	0.8792

Compare expression of checked genes

Lus10011339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.