Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13110 943 / 0 G6PD2 glucose-6-phosphate dehydrogenase 2 (.1) AT1G24280 926 / 0 G6PD3 glucose-6-phosphate dehydrogenase 3 (.1) AT5G35790 854 / 0 G6PD1 glucose-6-phosphate dehydrogenase 1 (.1) AT1G09420 550 / 0 G6PD4 glucose-6-phosphate dehydrogenase 4 (.1.2) AT3G27300 478 / 7e-164 G6PD5 glucose-6-phosphate dehydrogenase 5 (.1.2.3) AT5G40760 464 / 1e-158 G6PD6 glucose-6-phosphate dehydrogenase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003134 [exp] 1157 / 0 AT5G13110 973 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10006386 [exp] 860 / 0 AT5G35790 904 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10012340 [exp] 676 / 0 AT5G35790 705 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10014615 [exp] 459 / 1e-156 AT5G40760 905 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10032079 [exp] 463 / 1e-153 AT5G40760 873 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10014614 [exp] 432 / 1e-146 AT5G40760 782 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10012339 [exp] 174 / 4e-52 AT5G35790 181 / 5e-56 glucose-6-phosphate dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G059900 [exp] 958 / 0 AT5G13110 956 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.003G168000 [exp] 937 / 0 AT5G13110 950 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.014G166800 [exp] 859 / 0 AT5G35790 931 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Potri.013G005200 [exp] 557 / 0 AT1G09420 815 / 0.0 glucose-6-phosphate dehydrogenase 4 (.1.2) Potri.001G337400 [exp] 463 / 4e-158 AT5G40760 910 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.017G070200 [exp] 459 / 1e-156 AT5G40760 902 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.005G005866 [exp] 82 / 1e-17 AT1G09420 133 / 4e-36 glucose-6-phosphate dehydrogenase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00479 [flax] [poplar] G6PD_N Glucose-6-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02781 [flax] [poplar] G6PD_C Glucose-6-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011340 pacid=23159255 polypeptide=Lus10011340 locus=Lus10011340.g ID=Lus10011340.BGIv1.0 annot-version=v1.0 ATGGCGACTTTATCATCAGGAGCAGCTCAATGCCGTCCGCATTCATCCTCTCTGCTTCCACAATCAAATGGGCAGCGATATAATCGTCGGCTCAACTTCT CTCCTCAGTCTCATAAAAAAATTTCTCCAGCTGTGGTTCTCTCTCAGGGGGATTCTCGCCCTCGTGCCGTGTTGATGCAGGATGGAGTTATTGTTCTTGA TGGAATTTTGGCTACAGGTGCTGTGGCAACTCCTGCAAATCCAGCACCTAAGGAAGAGATCAAGAAGAAGAAATTGGAAGATGGGTTGCTTTCTTCTTCT TCAGGAATCTCTTCTCAGGAATTGAAAGAGTCAGCTGGATTTGATATCAATGAAAACGAGTCTTCTGTCACTATTACTGTTGTTGGAGCCTCTGGGGACC TGGCTAAAAAGAAGATCTTTCCTGCACTTTTCGCACTTTACTACGAGGGTTGTCTTCCAAAGCATTTTACTGTGTTCGGTTATGCTCGTAGTAAGATGAC TGATGCTGAGCTTAGGAACATGGTTAGCAGAACTTTGACTTGCAGAATTGACAAGAGGGACAACTGTGAGGAAAAGATGGATCAGTTTCTTAAAAGGTGC TTCTATCATTCAGGCCAATATGATTCACAAGAACATTTCGCACAACTGGACGAAAAGCTTAAAGAGCATGAGGGTGGCCGGGTGTCGAATCGCCTGTTTT ATTTGTCGATTCCACCGAACATATTCATCGATGCTGTGAAATGTGCAAGCTCCTCAGCTTCTGCTGCCAACGGCTGGACTAGAGTCATTGTCGAGAAACC ATTTGGTCGAGATTCAGAATCATCTGCTGCTTTGACAAGATCCCTCAAGCAGTATCTGACAGAGGATCAGATATTCAGGATAGACCACTATCTGGGGAAG GAACTCGTGGAGAATCTTTCGGTTCTCCGTTTCTCTAACCTCATATTCGAACCGTTGTGGTCGAGACAGTATATCAGGAATGTCCAGTTCATATTCTCGG AAGATTTTGGCACTGAAGGGCGTGGAGGGTATTTCGATCATTACGGGATAATAAGAGACATAATGCAGAACCATCTGCTCCAGATACTTGCACTTTTTGC TATGGAGACTCCTGTTAGCTTGGATGCAGAGGACATCCGGAATGAGAAGGTCAAAGTGCTGCGATCGATGAGGCCTTTAAAGCTCGAAGATATGGTGATC GGGCAGTACAAGAGTCATACTAGAGGAGGAATCAGTCATCCAGGCTATACTGATGACAAGACAGTACCAAAGGACAGCTTAACTCCAACTTTCGCGGCAG CTGCTCTTTTCATCGATAATGCGAGATGGGATGGAGTTCCGTTTCTGATGAAAGCTGGGAAAGCTTTACACAATAAAAGTGCTGAGATCAGGGTACAGTT CAGACATGTGCCCGGGAACTTGTACAACCGCAACATTGGAACAGATCTTGATCTAGACACGAACGAGCTTGTAATTAGAGTGCAGCCAGATGAAGCAATT TATTTGAAGATCAATAACAAGGTCCCCGGACTCGGGATGAGGCTAGATCGCAGCAACCTGAATCTTCTTTATTCAGCAAGGTACTCAAAGGAGATTCCAG ACGCGTACGAGAGGCTTCTTCTGGACGCGATCGAAGGCGAAAGAAGACTGTTTATCAGAAGTGACGAGCTTGATGCTGCTTGGTCTCTTTTCACACCGGT TCTGAAGGAAATTGAGGAGAAGAAGATCGTCCCCGAGTACTATCCATATGGAAGCCGCGGCCCTGTTGGTGCTCACTACCTTGCAGCAAGATACAATGTC AAATGGGGTGATGTTGGCATGGAGCAATAG
AA sequence Show only first row Show all	>Lus10011340 pacid=23159255 polypeptide=Lus10011340 locus=Lus10011340.g ID=Lus10011340.BGIv1.0 annot-version=v1.0 MATLSSGAAQCRPHSSSLLPQSNGQRYNRRLNFSPQSHKKISPAVVLSQGDSRPRAVLMQDGVIVLDGILATGAVATPANPAPKEEIKKKKLEDGLLSSS SGISSQELKESAGFDINENESSVTITVVGASGDLAKKKIFPALFALYYEGCLPKHFTVFGYARSKMTDAELRNMVSRTLTCRIDKRDNCEEKMDQFLKRC FYHSGQYDSQEHFAQLDEKLKEHEGGRVSNRLFYLSIPPNIFIDAVKCASSSASAANGWTRVIVEKPFGRDSESSAALTRSLKQYLTEDQIFRIDHYLGK ELVENLSVLRFSNLIFEPLWSRQYIRNVQFIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLKLEDMVI GQYKSHTRGGISHPGYTDDKTVPKDSLTPTFAAAALFIDNARWDGVPFLMKAGKALHNKSAEIRVQFRHVPGNLYNRNIGTDLDLDTNELVIRVQPDEAI YLKINNKVPGLGMRLDRSNLNLLYSARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPVLKEIEEKKIVPEYYPYGSRGPVGAHYLAARYNV KWGDVGMEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10011340 [exp]	0	1
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	2.0	0.9180
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10041433 [exp]	3.7	0.9039
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	5.5	0.9242
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10001650 [exp]	7.3	0.8935
AT1G50510			indigoidine synthase A family ...		Lus10009716 [exp]	9.2	0.9147
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	10.2	0.9157
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10016938 [exp]	10.7	0.8895
AT1G80930			MIF4G domain-containing protei...		Lus10003392 [exp]	11.1	0.8772
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10042340 [exp]	15.2	0.9036
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10018897 [exp]	16.1	0.8908

Compare expression of checked genes

Lus10011340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.