Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09220 462 / 3e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 293 / 9e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 289 / 4e-92 MEF21 mitochondrial editing factor 21 (.1) AT1G74630 288 / 1e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 273 / 6e-86 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G08510 270 / 5e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 273 / 6e-85 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 272 / 8e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G66520 271 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05750 265 / 3e-83 PDE247, CLB19 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003133 [exp] 878 / 0 AT1G09220 476 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 293 / 6e-94 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10005987 [exp] 285 / 5e-91 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023592 [exp] 288 / 1e-90 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 287 / 2e-90 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010385 [exp] 276 / 3e-86 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024222 [exp] 274 / 6e-86 AT1G74630 719 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 273 / 7e-86 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031661 [exp] 274 / 1e-85 AT2G29760 427 / 3e-141 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G054400 [exp] 612 / 0 AT1G09220 487 / 8e-169 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G223900 [exp] 315 / 6e-102 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 313 / 4e-100 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G035900 [exp] 306 / 1e-97 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 301 / 5e-96 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G202600 [exp] 291 / 6e-93 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G035900 [exp] 285 / 3e-90 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.010G168800 [exp] 282 / 1e-88 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G175900 [exp] 279 / 2e-88 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 279 / 3e-87 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10011341 pacid=23159247 polypeptide=Lus10011341 locus=Lus10011341.g ID=Lus10011341.BGIv1.0 annot-version=v1.0 ATGGAGAAATCTCTGTATGTGCTACTCAGAAATACAGTAGCCAATCTGTCCATAGCTCGACAAGCTCACTCTGTACTGCTTACAGCAGGCATATTAAGCC GTTCCATGGTCCTTTTCAACACTTTGCTTCGATCTTACTCCCTCGGTGAAGCTCCCCACAAAGCTTTCTCAGTCTACAGCCAACTCCAGACGTTGTATTA TTTCAATTCCCCGTCTCACCACCAGCCACCTTCATTTGACAGCTATTCCTACACTTTCCTGATCAATACAGCCACTTACGCTTCCTCTCTTGCCGTTGGA ACACAGTTTCACTGTCTTGGAATCAAAGCTGGGTTTCAGTCCCATGTCTACGTCCAGACCTCGCTGGTCAACATGTATGCTGCTGCTGGTTTTTTATCCG ATGCGCTGATCATTTTCGACGAAATGCCTGAGAGAAATGCAGTCACTTGGAATGCAATGATAACCGGGTTGGTGAAGCTGGGGGAGCTGGAATTCGCTCG CTCGCTCTTTGACGAGATGTTGGAAAAGAATGTCGTCACTTGGACCTGTATGATCGATGGATACATAAGGATGAGCAGATTCGGTGAAGGTTTCGCCTTG TTTCGTAGAATGGCTTGTTTAGAGGATGACGTGATCAGGCCTAGTGAGATAACCATTCTCGCCATTCTTTCTGCCGTTTCTTCTTTGAAGATGCTGAAGC ATTGCAGGCTGATCCATTGTTATTCGGAGAAACGAGGGTTTCATACCTTCGACATCCGGGTTGCTAACTCAATCGTGGATACCTACGCCAAATGCGGCTG CATAGCAAGTGCTTCCAGATTCTTCAACGACATGGAGGGTAAGAATTTGGTATCTTGGACATCGATCATTACAGGGCTGGCAATGCACGGGATGGGGAAG GAAGCAGTGGAGTGTTTCGATCGAATGGAGAGAGCCGGTTGGAAGCCGAATCGAGTGACTTTCCTGAGTGCTTTCAATGCGTGCAGTCACGGAGGACTAT ACGAGCAAGGACTCAAGTTCTTCGACGAAATGGTGAGCAGTAAGTATCGAGTTTCTCCCCATATCAAGCATTACGGGTGTTTAGTCGATATGCTGGCTAG GCTAGGAAGGCTGGAAGAAGCAGAAAGTTTGGCAATGGGAATACCTAGTGAAATTGCTAATGTGGTGATATGGAGGACAATTCTTGGAGCTTGTAGCTTT CATGGTAACGTTGAGATGGGGGAGAGGGCGACGAGGAAGATAATGGAGATGGAGAGAGGATATGGAGGTGACTATATTCTGATGCATAACATATTTGTAG GGTCAGGGAGGTTTTGTGATGCTGAAATAGTTAGGAGATTGATGTACCAGAGGAGTGCCTTCAAACTTCCTGGCCAGAGTTCGATCTAA
AA sequence Show only first row Show all	>Lus10011341 pacid=23159247 polypeptide=Lus10011341 locus=Lus10011341.g ID=Lus10011341.BGIv1.0 annot-version=v1.0 MEKSLYVLLRNTVANLSIARQAHSVLLTAGILSRSMVLFNTLLRSYSLGEAPHKAFSVYSQLQTLYYFNSPSHHQPPSFDSYSYTFLINTATYASSLAVG TQFHCLGIKAGFQSHVYVQTSLVNMYAAAGFLSDALIIFDEMPERNAVTWNAMITGLVKLGELEFARSLFDEMLEKNVVTWTCMIDGYIRMSRFGEGFAL FRRMACLEDDVIRPSEITILAILSAVSSLKMLKHCRLIHCYSEKRGFHTFDIRVANSIVDTYAKCGCIASASRFFNDMEGKNLVSWTSIITGLAMHGMGK EAVECFDRMERAGWKPNRVTFLSAFNACSHGGLYEQGLKFFDEMVSSKYRVSPHIKHYGCLVDMLARLGRLEEAESLAMGIPSEIANVVIWRTILGACSF HGNVEMGERATRKIMEMERGYGGDYILMHNIFVGSGRFCDAEIVRRLMYQRSAFKLPGQSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10011341 [exp]	0	1
AT5G48340			unknown protein		Lus10036410 [exp]	3.7	0.9206
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	5.7	0.9229
AT1G03560			Pentatricopeptide repeat (PPR-...		Lus10039798 [exp]	6.5	0.8803
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	7.5	0.9104
AT5G64816			unknown protein		Lus10009081 [exp]	7.9	0.8935
AT1G26520			Cobalamin biosynthesis CobW-li...		Lus10004653 [exp]	8.2	0.8860
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	8.5	0.9027
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	9.9	0.9025
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	10.1	0.9049
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	10.7	0.9179

Compare expression of checked genes

Lus10011341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.