Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003132 [exp] 288 / 7e-100 ND 45 / 7e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G059800 [exp] 71 / 5e-15 AT5G50610 / unknown protein Potri.003G168200 [exp] 54 / 4e-09 AT5G50610 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011342 pacid=23159257 polypeptide=Lus10011342 locus=Lus10011342.g ID=Lus10011342.BGIv1.0 annot-version=v1.0 ATGGACACCAAGGCCAAAAGGGTCCAACCACCAAGAAGGGCTATTGATCTTCAAAACCTTGTTCTGAATTCAATAGCTGTAGTGGGTTTCACCCTGTTGT TGTATTCACCCACTAAGCAGCTTGTGTTACTACATGTTCCTAGTCTTGTGTCGTGTCTCACAAGCCACAAGTGTGTTTTCTTGTTGGTGAATGTGATCAT GGTTTTCCTCCTGGTCGGAGAATCCAGGCTCGAAAGTCTCGTGGGCCGGTGGCAGCTCGAGCCTTCTTCTACTACTGGTGATGCATATGATGAGTACATT CGACGAGCTAGAACCGCGAAGGAAGAGCCGGTTGTCAAGGAAGAGGAAAGTGTTGAGGTGGAGGATGAAACAGTGTCGTTTCATGATGCTGAGGTGGGAG AAGAAGTGGAGGACAAGCAAGTGATTGTTTGTGAAGAGAAGGAAAAAGAAGTTGTTGTTGAAGAAGAAGAAAGGAAGGAAGTTGAAAAGGGTGGGAAAGG AGATGAGCTGAATAGGAGGATAGAGGAGTTCATTGCAAGGGTCAATAGACAAAGGCAAATTGAGATCGGTAGCAGAGTCAGAGTAGTAGGAGACCGAAGT CTGATTTCAAGTTTGAAAGTCAACTAA
AA sequence Show only first row Show all	>Lus10011342 pacid=23159257 polypeptide=Lus10011342 locus=Lus10011342.g ID=Lus10011342.BGIv1.0 annot-version=v1.0 MDTKAKRVQPPRRAIDLQNLVLNSIAVVGFTLLLYSPTKQLVLLHVPSLVSCLTSHKCVFLLVNVIMVFLLVGESRLESLVGRWQLEPSSTTGDAYDEYI RRARTAKEEPVVKEEESVEVEDETVSFHDAEVGEEVEDKQVIVCEEKEKEVVVEEEERKEVEKGGKGDELNRRIEEFIARVNRQRQIEIGSRVRVVGDRS LISSLKVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011342 [exp]	0	1
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	1.7	0.9210
					Lus10003132 [exp]	2.0	0.9153
AT1G67540			unknown protein		Lus10037003 [exp]	2.4	0.8939
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10026054 [exp]	3.7	0.8520
AT5G48290			Heavy metal transport/detoxifi...		Lus10025182 [exp]	6.9	0.8753
AT3G15420			Transcription factor TFIIIC, t...		Lus10023017 [exp]	8.7	0.8231
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	14.1	0.8709
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	17.9	0.8497
AT1G52140			unknown protein		Lus10012967 [exp]	19.0	0.8319
AT2G35612			unknown protein		Lus10033285 [exp]	21.5	0.7877

Compare expression of checked genes

Lus10011342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.